Stenotrophomonas sp. 169: ICJ04_12655
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Entry
ICJ04_12655 CDS
T08645
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
steq
Stenotrophomonas sp. 169
Pathway
steq03030
DNA replication
steq03430
Mismatch repair
steq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
steq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ICJ04_12655 (dnaE)
03430 Mismatch repair
ICJ04_12655 (dnaE)
03440 Homologous recombination
ICJ04_12655 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
steq03032
]
ICJ04_12655 (dnaE)
03400 DNA repair and recombination proteins [BR:
steq03400
]
ICJ04_12655 (dnaE)
Enzymes [BR:
steq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ICJ04_12655 (dnaE)
DNA replication proteins [BR:
steq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ICJ04_12655 (dnaE)
DNA repair and recombination proteins [BR:
steq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ICJ04_12655 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QNR96373
UniProt:
A0A7H1AJ01
LinkDB
All DBs
Position
2891129..2894707
Genome browser
AA seq
1192 aa
AA seq
DB search
MSNSRFVHLHVHTEFSLADSTIRVPAKPEQADPKKAKQANLLSRSVELGLPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVMIAEEGQDPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAVHPEWLKAGCQNLFALTGRESLAGRLAAAGKHELAEQQLADWQRVFGDGLHL
ELTRTGRDGEEAFNQFALMAAGQRGLPVIASNDVRFLQPTDFNAHEARVCIASGRVLDDP
KRPRDYSDQQYLKSAEEMCALFADIPDAIDNTRALAERCNIEMRLGTYFLPNYPVPDDET
LDSWIRSESRKGLALRLEKNPVAAGMTAQDYSERLEFELDTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDCGRVLGFPYGLVDGVAKLIPNILGIS
LKDAMGEGKDSEMASPELIQRYQSEDDVRDLIDLARQLEDLTRNAGKHAGGVVIAPEPLA
EFCPLFAEHDENGIGRNPVTQFDKNDVEEIGLVKFDFLGLRTLTIIDWAVKAINKRHERA
GIPPVDIAALPLDDAATYKDIFASGNTGAVFQFESSGMRRLLKDAKPDRFEDLIALVSLY
RPGPMDLIPSFVDRKHGREDVEYPDPRTERILRDTYGIMVYQEQVMQMAQIVGGYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKDGVGEAKADAIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTEKVVGFLDEVRNLGLTVLPPKVNQSAYMFEA
ATPDTIQYGLGAIKGVGQGACEAVVDERLQKGAYTNLLDFCTRIGSAKLNRRTLEAMINC
GALDELGRNRASLMLQLPEVIKATEQMARERASGQNSLFGGPDPSAPAIHLELQETDEWP
LLQRLTGERDTLGFYLSGHPFDPHRDDVRDLVGTDLGAVEKIWSANSGGGGGEKRWRPEV
QTVLAGQVVGVRRKGESQIFIQLEDGRGRVECSAFSDAMAEFGHLMTKDRILVVKGGLRE
DEFNGGFALRIRQCWDFDEVCANYATRLSLRVDLRRERPVWQRLNALLDRHRPGRTPLRL
DLLLKDEEGSLAGMLDVGGDSAVRIDSKLIDALRADPAIRTLKVRYSPPWAS
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactcccgtttcgtccatctccacgtccacaccgaattttcgctggcggattcc
accatccgtgtgccggcgaagccggaacaggctgacccgaagaaagccaaacaggccaac
ctgctgtcgcgctcggtcgagctcgggctgcccgcgctggcagtcaccgatctgaacaac
ctgttcgccctggtgaagttctacaaggcggccgaaggcgtgggcatcaagccgatcgcc
ggcgccgacgtgatgatcgccgaggaaggccaggatccgtggcggatgaccctgctgtgc
cgtgaccgcgaaggctatctcagcctgtcccggctgctcacgcgtgcctggatggagggc
catcgcccggaaggcggcgtcgcggtgcatccggaatggctgaaggccggctgtcagaac
ctgttcgcgcttaccggccgtgaaagtctcgccggacgtctcgctgcggcaggcaaacat
gagctggccgagcagcaactggctgactggcagcgcgtgttcggcgatggactgcacctg
gaactgacccgcaccggccgcgacggcgaagaagccttcaaccagttcgcgctgatggca
gcgggccagcgtggcctgccggtcatcgccagcaacgatgtgcgcttcctgcaaccgacc
gatttcaacgcgcacgaagcgcgcgtgtgcatcgcctccggtcgcgtgctggatgacccc
aagcgcccgcgggactacagcgaccagcagtacctgaagtcggccgaggagatgtgcgcg
ctgttcgccgacatccccgatgccatcgacaatacgcgtgcgctggcagagcgctgcaac
atcgagatgcggctgggcacctacttcctgcccaactacccggtgcccgacgacgagacg
ctggacagctggatccgcagcgagtcgcgcaagggcctggcactgcgcctggaaaagaac
ccggtcgctgccggcatgaccgcgcaggactacagcgagcgcctggaattcgagctggat
accatcatcaagatgggcttccccggttacttcctgatcgtggcggacttcattcagtgg
ggcaagaaccagggcatcccgatcgggcccggccgtggttcgggtgccggttcgctggtg
gcatgggcgctgcagatcactgatctggatcccctgccctacaacctgctgttcgagcgc
ttcctcaacccggaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaagtcatcgactacgtcgcgcgcaagtacggccgcgagcgggtcagccagatc
atcacctacggcaccatggcggccaaggccgtggtgcgtgactgcggtcgcgtgctgggc
ttcccgtacggactggtcgatggtgtggccaagctgattccaaacatcctcggcatttca
ctgaaggatgcgatgggggaaggcaaggacagcgagatggcctcgccggaactcatccag
cgctaccagagcgaagacgatgtccgcgacctgatcgatctcgcacgccagctggaagac
ctgacccgcaatgccggcaagcatgccggtggcgtggtcatcgcccccgaaccactggcc
gagttctgcccgctgttcgccgaacacgatgaaaacggcatcggccgcaacccggtcacg
cagttcgacaagaacgatgtggaagaaatcggcctggtgaagttcgacttcctgggcctg
cgcacgctgaccatcatcgactgggcagtgaaggcgatcaacaagcgccacgagcgcgcc
ggcattccgccggtggatatcgccgcgctgccgctggatgatgcggcgacctacaaggac
atcttcgcctccggcaacaccggcgcggtgttccagttcgaatcctccggcatgcgtcgc
ctgctgaaggacgccaagcccgatcggttcgaagacctgatcgcgctggtgtcgctgtat
cgccccggcccgatggacctcattccctccttcgtcgaccgcaaacatgggcgcgaggat
gtggagtatcccgatccgcgcaccgaacgcatcctgcgcgacacctacggcatcatggtg
tatcaggagcaggtgatgcagatggcgcagatcgtcggcggctactcgctgggcggcgcc
gatctgctgcgtcgcgcgatgggcaagaaggtgccggccgagatggccaagcaccgtgaa
atcttccgcgagggcgcggccaaggacggtgtaggcgaagccaaggccgatgcgatcttc
gacctgatggagaagttcgccggctacggcttcaacaagtcgcacgctgccgcctacgcg
ctggtgagttaccagaccgcgtggctgaaacgccattatcccgccgagttcatggccgcc
acgctgtcgtcggacatggacaataccgagaaggtcgtcggcttcctcgacgaggtgcgc
aacctcggcctgaccgtgctgccgccgaaggtgaaccagtccgcctacatgttcgaggcc
gccacgccggacaccatccagtacggtctgggagcaatcaagggcgtgggccagggcgcc
tgcgaggccgtggtcgatgagcgcctgcagaagggcgcgtacaccaacctgctggatttc
tgcacgcgcatcggctcggccaagctcaaccggcgcacgctggaggcgatgatcaactgc
ggtgcgctggacgaactgggccgcaaccgcgcgtcgttgatgctgcagctaccggaggtg
atcaaggccaccgagcagatggcgcgcgagcgtgcatcgggtcagaactcgctgttcggt
ggaccggacccgagtgcgccggcaatccacctggaactgcaggagaccgacgaatggccg
ctgctgcagcggctcaccggcgagcgcgacacgctgggcttctatctcagcggacatccg
ttcgacccgcatcgcgacgatgtgcgtgacctggtcggcaccgatctgggcgccgtggaa
aaaatctggagtgccaacagcggcggtggtggcggtgaaaagcgctggcgcccggaagta
cagacggtactggccggccaggtggttggcgtgcgccgcaagggtgaaagccagatcttc
atccagctggaagatggtcgcggccgggtggaatgcagtgcgttctccgatgcgatggcc
gagttcggccacctgatgaccaaggaccgcatcctggtggtcaagggcggcctgcgcgaa
gacgagttcaatggcggcttcgccctgcgcatccgccagtgctgggatttcgacgaggtc
tgtgccaactacgccacccggctttcactgcgggtggacctgcgccgtgaacgccccgtg
tggcagcgcctgaacgcactgctggaccggcatcgccccggccgtacgcccctgcgcctg
gacctgctgttgaaggacgaggaaggctcgctcgcgggcatgctggacgtgggcggcgac
agcgcggtgcgcatcgattccaagctgatcgacgccctgcgcgcggacccggcgatccgc
accctgaaggtgcgctacagcccgccctgggcgagctga
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