Stenotrophomonas sp. 169: ICJ04_13390
Help
Entry
ICJ04_13390 CDS
T08645
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
steq
Stenotrophomonas sp. 169
Brite
KEGG Orthology (KO) [BR:
steq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
steq03019
]
ICJ04_13390 (hrpA)
Enzymes [BR:
steq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ICJ04_13390 (hrpA)
Messenger RNA biogenesis [BR:
steq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ICJ04_13390 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
AAA_22
AAA_19
AAA_30
nSTAND3
ResIII
NACHT
SRP54
AAA_25
T2SSE
AAA_23
Cas3-like_C_2
ABC_tran
AAA_24
SLFN-g3_helicase
Helicase_RecD
AAA_16
TsaE
Motif
Other DBs
NCBI-ProteinID:
QNR96505
UniProt:
A0A7H1AJD3
LinkDB
All DBs
Position
complement(3085843..3089931)
Genome browser
AA seq
1362 aa
AA seq
DB search
MKSIEKNQASSLRDQRAALDGAMTRDRSRLLALLSRWQAKPGDAGLKSAFEQALQASLQR
RQARARQKPAITLDPQLPIAREAEAITALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
EAGMIGCTQPRRIAARAVATRVAQELKSELGQLVGYQVRFNDKVSEESRIKFMTDGILLA
EIASDRWLSRYDTIIVDEAHERSLNIDFLLGYLKQLLKKRPDLKLIVTSATIDTGRFAEH
FDNAPVISVEGRTFPVDVRYRPLEGEGEAQGERTVNDAIVGAIDEITRLDARGDVLIFLP
GEREIRDAHQSLERRKYRQTEVLPLYARLSNQDQDRVFNPGPNRRIVLATNVAETSLTVP
RIRYVVDPGFARVKRYSPRQKLDRLHIEPISQASANQRKGRCGRVSEGICYRLYAEPDFL
ARPEFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQQLAELGAVDTE
RRLTAVGRQMARLPVDVKLARMLVAAQAAGCLKPMLVIASFLGIQDPRERPPEARGAADT
AHAQFADGRSEFVGVLRLWDAYRQAHEDMTQSKLRDWCGRNFLGFLRMREWRELHRQLRL
LCEELGWAEEGNEASMAPLLAGSKAPPASTDDATAIKATRGQLHRAARLAREGKPAEQAP
APVAASARKDQAPEGGGFSERARAAAYQTLHRALIAGLPTQIGHRTEKGDFQAPRQRRFQ
PFPGSTLAKRPPPWLLAATLLDTQKIWGLTNASIEPDWVIAELPHLLLRRHFDPHWSRAQ
GQVLASEQISLFGLVLAPKKPVHYGRIEPSEAHDIFVRQALVTGEINTRASVIADNQKVL
EQAREEEAKLRRAGIVADEGWQARWYLDRIPSEIHSAAGLDAWWKSLSPAQRHGVSWSLI
DLLPGEGSEEDRFPKYLSLGDARLPLHYRFEPGADDDGVTLDVPLHLLNALDPVQLGWLA
PGFVADKATGLIRSLPKAMRRNYVPAPDFARAFAEAFPQPSADDIRGELARFLSRATGAS
VALVDFDLDAVDTHLHMNLRLRDEQGKVLATSRDLDGLRARFGDKAGQAFAARAGRDMAE
EGLREFPATPIPLQVPGEAGVPAYPALVDEGDSAALRIFADRQQAADAHPKGVRRLLEIA
LGEKAKQARKQLPVSPKTGLLYAAIESQERLRGDIVDAAMNAVLADGLADIRDPQAFAQR
RDSAIKTLFGEAMERLKLAESILGLVAELKPALEAPLMGWARGNLDDMERQLAGLVHAGF
LRETPADALAQYPRYLKAMLLRTERAKRDPPRDQARMLELHPFLEALEQGRGKRLQDRPQ
WQALRWDIEELRVSLFAQELIGRGGISAKKVAQRAAELQKLG
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctattgaaaaaaaccaggcgtccagcctgcgcgatcagcgggccgccctcgac
ggcgccatgacccgggaccgctcgcgattgctcgcgctgttgtcccggtggcaggcgaag
ccgggcgacgcgggcctgaagtcggccttcgaacaggcgctgcaggcctcgttgcagcgc
cggcaggcgcgtgctcggcagaaaccggccatcactctggacccgcaactgcctatcgcg
cgtgaagccgaggcgatcacggcgctgatccgcgaccaccaggttgtcgtgatcgccggt
gagaccggttcgggcaagacgacccagctgcccaagctgtgtctggccgcgggccgcggt
gaggccggcatgatcggctgcacccagccgcggcggatcgccgcacgggcggtggccacc
cgcgtcgcccaggagctgaagagtgagctgggccagctggtcggctatcaggtgcgcttc
aatgacaaggtcagcgaagagagccggatcaagttcatgaccgacggcatcctgctggcg
gaaatcgccagtgaccgttggttgtcgcgctacgacacgatcatcgtggatgaggcgcac
gagcgcagcctcaacatcgatttcctgctgggctatctgaagcagctgctgaagaagcgt
ccggacctcaagctgatcgtgacctcggccaccatcgatacgggtcgcttcgccgagcac
ttcgacaatgcgccggtgatcagcgtcgaaggccgtaccttccccgtggacgtgcgttac
cggccgttggaaggcgagggggaagcgcagggcgagcgcacggtcaacgatgcgatcgtc
ggtgccatcgacgagatcacccgtctggacgcgcggggcgatgtgctgatcttcctgccc
ggcgagcgcgagatccgcgatgcccaccagtcgctggagcgtcgcaagtaccgccagacc
gaggtgctgccgctgtatgcgcggctgtccaaccaggaccaggaccgggtattcaatccg
ggtccgaaccgtcgcatcgtgctggcgaccaacgtggccgaaacctcgttgaccgtgcca
cgtatccgctacgtcgtggatccggggttcgcccgggtcaagcgctacagcccgcggcag
aaacttgatcgcctgcacatcgaaccgatttcgcaggccagcgccaaccagcgtaaaggg
cgctgcgggcgcgtgtccgagggcatctgttaccgcctgtatgccgagcctgatttcctg
gcccggccggagttcaccgatccggaaatccgccgctccagcctgtccggggtgatcctg
cgcatgctgcagctgggcttgggtcgcatcgaggacttcccgttcctggaggcgccggac
gaacgcgccgtggccgatgggtggcagcagcttgccgagctcggcgcggtcgataccgag
cggcgactgacggcagtgggacggcagatggcgcggttgccggtggacgtgaagctggcc
cgcatgctggtcgcagcgcaggcggccggttgcctgaagccgatgctggtgatcgcatcc
ttcctcgggatccaggatccgcgggagcgtccgcccgaggcgcgcggtgcggccgatacg
gcgcatgcgcagtttgccgatggacgctctgagttcgtgggtgtcctgcgattgtgggat
gcctaccggcaagcccacgaagacatgacgcagtccaagctgcgcgactggtgtgggcgc
aacttcctcggcttcctgcgcatgcgcgagtggcgggagctgcatcgacagctgcgcctg
ctgtgcgaagagctggggtgggcggaggaaggcaacgaggcctcgatggcgccgttgctg
gccggcagcaaggcgccccctgcgagcaccgacgacgccacggcgatcaaggcgacgcgc
ggccagttgcatcgcgccgcgcggctggcacgcgagggcaagcctgccgagcaggcgcct
gcaccggtggcggcaagtgcccgcaaagaccaggcgccagagggcggcggcttcagcgag
cgtgcacgtgccgctgcctaccagaccctgcatcgcgcgctgatcgccggcctgccgacg
cagatcggccaccgcacggagaaaggcgacttccaggccccacgacagcggcgcttccag
ccgttcccggggtccacgctggccaagcggccgccgccgtggctgctcgccgccaccttg
ctggacacccagaaaatatggggcctgaccaacgcgtcgatcgagccggactgggtgatc
gccgagctgccccatcttctgctgcgtcgacacttcgatccgcattggtcgcgcgcgcag
ggtcaggtgctggcgtcggagcagatcagcctgttcgggttggtgctggccccgaagaag
ccggtgcattacgggcgtatcgagccgtccgaagcgcacgacatctttgtccgtcaggcg
ttggtgaccggcgaaatcaacacccgcgccagcgtcatcgccgacaaccagaaagtgctg
gagcaggcgcgcgaagaggaggccaagctgcggcgtgccgggatcgtcgccgacgaaggc
tggcaggcgcgctggtacctggatcgcattccgtcggaaatacattccgccgcggggctg
gatgcatggtggaagagtctgtcgcctgcgcagcgccatggcgtgagctggtcactgatc
gacctgctgccgggcgagggcagcgaggaggaccggttcccgaagtacttgtcgctgggc
gatgcacggctgccgctgcattaccggttcgagccgggagcggacgacgatggcgtgacg
ctggacgtaccgttgcacctgctcaatgcgttggacccggtgcaactgggctggctggcc
cccggtttcgtggccgacaaggccaccgggttgatccgcagcctgcccaaggcgatgcgg
cgcaattacgtgcccgcacctgatttcgcacgtgcgttcgccgaagcattcccgcagccc
agcgccgatgacatccgcggtgagctggcgcgcttcctgtcgcgtgcaaccggtgcgtcc
gtggcgctcgtcgatttcgacctcgacgcagtggacacgcacctgcacatgaacctgcgg
ctgcgcgacgagcaaggcaaggtgttggccacctcgcgcgatctggatggtctgcgcgcc
cgctttggggacaaggccgggcaggcgttcgcggcgcgtgccggccgtgacatggcggag
gaggggctgcgcgagttccccgccacgcccattcccctgcaggtgcccggcgaggcgggc
gtgccggcttaccctgcgctggtggacgaaggggacagcgccgcgctgcgcatcttcgcc
gaccggcagcaggcggctgacgcgcatccgaagggtgtgcgccgcctgctggagatcgct
ttgggcgaaaaagccaagcaggcccgcaagcagcttcccgtctcccccaagaccggcctg
ctgtatgccgccatcgaatcacaggaacggctacggggtgacattgtcgatgcagcgatg
aacgcggtgctggccgatggcctggccgacatccgcgatccccaggcgttcgcgcagcga
cgggacagtgccatcaagacgctgttcggcgaagcgatggagcgcctgaagctggcggaa
tccatccttggactggtggcggaactgaagccggcgctggaagcaccgttgatggggtgg
gcgcgcggcaacctcgatgacatggagcgccagctcgcagggctggtgcatgccggcttc
ctgcgtgaaacgccggccgacgcgctcgcgcagtatccgcgctacctgaaggcgatgctg
ctgcgcaccgagcgggccaagcgtgatccaccgcgcgaccaggcccgcatgctggagctg
catccgttcctggaggccctggagcaggggcgcggaaagcggctgcaggaccgcccgcag
tggcaggcactgcgttgggacatcgaagaactgcgcgtttccctgttcgcccaggagctg
atcgggcgcggcggtatttcggcgaagaaggtggcgcagcgggcggccgaactgcagaag
ctgggctga
DBGET
integrated database retrieval system
