Stenotrophomonas sp. 169: ICJ04_16495
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Entry
ICJ04_16495 CDS
T08645
Name
(GenBank) RNA pyrophosphohydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
steq
Stenotrophomonas sp. 169
Pathway
steq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
steq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ICJ04_16495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
steq03019
]
ICJ04_16495
Messenger RNA biogenesis [BR:
steq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ICJ04_16495
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX
NUDIX_4
Motif
Other DBs
NCBI-ProteinID:
QNR97060
LinkDB
All DBs
Position
complement(3780422..3781036)
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AA seq
204 aa
AA seq
DB search
MIDPDGYRPNVGIVLMRQDGQVFWARRVRRDGWQFPQGGMNTDETPVEAMYRELQEETGL
LPEHVEVLGATPGWLRYKLPARAIRRNERQVCIGQKQVWFLLRLTGDESHVQLDLTDSPE
FDNWRWVDFWYPVEHVVMFKRGVYARALRHLAPMARGVDGADVSQMPTGAQEAWMPGHAA
GHDRPRKRATTKGYWPKKVQGDPT
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgatccggacggctatcgaccgaacgtcggcatcgtgttgatgcgccaggatggt
caggtgttctgggcacgtcgtgtgcgccgggatggctggcagttcccacagggcggcatg
aacacggatgagacgcccgtcgaggccatgtatcgagagttgcaggaagaaacgggcctg
ttgcctgagcacgttgaagtgctgggagcaacgcctgggtggttgcgctacaagctcccc
gcgcgggcgatccgtcgcaatgagcgacaggtgtgcattggccagaagcaggtctggttc
ctgctacgcctgactggtgacgagtcgcacgtacagctggatctgaccgacagcccggag
ttcgacaattggcgttgggtggatttctggtacccggtggaacacgtggtgatgttcaag
cgtggcgtttatgcacgtgcgctgcggcatcttgcgcccatggcccgcggtgtcgacggt
gcggatgtatcgcagatgccgacaggcgcgcaggaggcctggatgccaggccacgctgcg
gggcatgatcgtccgagaaagcgggcgaccacgaaagggtactggccgaaaaaagtgcag
ggcgacccgacgtaa
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