Stenotrophomonas sp. 169: ICJ04_17225
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Entry
ICJ04_17225 CDS
T08645
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
steq
Stenotrophomonas sp. 169
Brite
KEGG Orthology (KO) [BR:
steq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
steq03019
]
ICJ04_17225 (hrpB)
Enzymes [BR:
steq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ICJ04_17225 (hrpB)
Messenger RNA biogenesis [BR:
steq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ICJ04_17225 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
Flavi_DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
QNR97192
UniProt:
A0A7H1ALC0
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All DBs
Position
3933275..3935782
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AA seq
835 aa
AA seq
DB search
MSTPHFPISSLLPQVLDALAAHPRLVLEAPPGAGKTTQVPLALLDAPWLQGRKIILLEPR
RVAARSAAQFMARQRGEDVGDTVGYRIRFDNKVSARTRIEVVTEGILTRMLQDDPMLEGV
GAILFDEFHERHLSGDLGLALALDVQAQLRDDLRLVVMSATLDGERLAHFLDAPRLSSEG
RSFPVEVSHFSARRDELLELQVRRAVQQALASHPGDVLVFLPGQREIQRVLAGLQDSVDN
GTEVLPLHGELPVEQQGRVLQPATDGRRRVVLATNVAESSVTLPGVRVVIDSGLAREPQY
DPNSGFTRLDVVHIAQTSADQRAGRAGRVASGWAWRLWPQSQRLEPQRRAEIEQVELAGL
ALELAAWGSSDLRFVDAPPAGPLAAARELLQRLGALSSGNAITAQGRRILALGTHPRLAS
MLLAADTAGEQALAADVAALLEARDPLRQGGDGLAARWRALAAFRSGRAPHDANRSGLAA
IDAAAKQWRRRLRCNAVPPTSIEAHRLGDLLAHAFPDRIAYRHPNDPLRYLLANGRSARL
HELSDLRGEPWLVASELRFEARGDALLLRAAPVDEQYLRRAFPAGFVTEDIVRWDADRRA
LVALRESRFDRIVFDSRSAGRVDPAHAAAALTEAVAELGLQALPWTDGLRQWQARVQGLR
RWMPELALPDVGDAALLASRATWLQPAFRGKTRLDALDEASFGEALKTPMDWSQRQLVER
HAPTRIRVPSGQERAISYALDSETGEPVPPVLAVKLQELFGLADTPRMADNRVALTLHLL
SPGGRPLQVTQDLRNFWANTYAEVKKEMKGRYPRHPWPEDPWTATATHRAKPRGT
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccccgcacttcccgatttcgtcgctgttgccgcaggtgctggatgcgctggcg
gcgcacccccggctggtgctggaggcccccccgggggccggcaagactacccaggtgccg
ctcgcgctgcttgatgccccctggctgcagggcaggaagatcatcctgctggagccgcgc
cgcgtcgcggcacgcagtgccgcgcagttcatggcgcgccagcgcggcgaggacgtcggt
gacacggtgggctaccgcatccgcttcgacaacaaggtgtcggcgcggacgcgcatcgag
gtggtgaccgaaggcatcctgacccggatgctgcaggacgacccgatgctggagggcgtc
ggcgcgatcctgttcgacgaattccatgagcggcatctcagtggtgacctgggcctggcg
ctggcgctggatgtgcaggcacagctgcgcgacgacctgcgcctggtggtgatgtcggca
acgctggatggcgaacggcttgcccacttcctcgacgcgccgcgtctgtccagcgagggg
cgcagctttccggtggaggtcagccatttttcggcacgccgcgacgaactgctggaactg
caggtccgccgcgcggtgcagcaggcgttggccagccatcccggcgatgtgctggtgttc
ctgcccggacagcgcgaaatccagcgcgtactggcgggtctgcaggacagcgtggacaac
ggcaccgaggtgctgccgctgcacggcgagctgccggtggaacaacaagggcgcgtcctg
cagcccgccaccgatggccgacgacgcgtggtgctggccaccaacgtggccgaatcatcg
gtcaccctgcccggggtgcgcgtggtgatcgatagtggcctcgcacgcgagccgcagtac
gatcccaacagcggcttcacccgtctggacgtggtgcacatcgcgcagacctcggccgat
cagcgcgccggtcgcgccggtcgcgtcgccagcggctgggcatggcggctgtggccgcag
tcgcagcggctggagccccagcgccgggcggagatcgaacaggtggaactggccggcttg
gcgctggagctggcggcgtggggcagcagcgacctgcgcttcgtcgacgcgccgccggcc
ggaccgttggccgccgcgcgggagctgctgcagcgtctgggggcgttgtcgtccggcaac
gcgatcacggcgcagggccgtcgcatcctggcattgggcacacacccgcgattggcctcg
atgctgctggcggccgatacggcaggcgagcaggcgctggctgccgacgtcgccgcgctg
ctggaggcgcgcgatccgctgcgccagggcggtgacgggctggccgcgcgctggcgtgcc
ttggccgcattccgctccggccgcgcgccccacgatgcgaaccgcagtgggctggccgcc
atcgatgcggccgcgaagcaatggcgccgacgcctgcgctgcaatgccgtgccgcccacc
agcatcgaagcgcatcgactgggcgacctgctggcccacgccttccccgaccgcatcgcg
taccgacatcccaacgacccgctgcgttacctgctggccaacggccgcagcgcgcgcctg
cacgaactcagcgacctgcgcggcgagccgtggctggtggccagcgagctgcgcttcgag
gcacgcggtgatgcgttgctgctgcgcgctgcaccggtggatgagcagtacctgcgccgc
gcatttccggcgggcttcgtcaccgaggacatcgtgcgctgggacgccgatcgacgcgcg
ctggtcgcgctgcgggaaagccgtttcgaccgcatcgtcttcgacagccggtcggcgggg
cgcgtcgatcccgcccatgccgccgccgcgctgaccgaggcagtggccgaactcgggctg
caggccctgccgtggaccgacggcctgcgccaatggcaggcgcgcgtgcaggggctgcgc
cgctggatgcccgaactcgccttgccggatgtcggcgatgccgcgctgctggccagtcgc
gccacgtggctgcagcctgccttccgcggtaagacccggctggatgcgctggatgaggcc
agctttggcgaggcactgaaaacgccgatggactggtcgcagcgccagctggtggagcgc
catgcaccgacccgcatccgtgtgccgtccgggcaggagcgcgcgatcagctacgccctg
gacagcgagaccggcgagcccgtgcccccggtgctcgcggtgaagctgcaggagctgttc
ggcctggcagatacgccacggatggccgacaaccgtgtcgcccttaccctgcatctgctg
tcgccgggcggacgtccgctgcaggtcacccaggatctgcgcaacttctgggcgaacacc
tatgcggaggtgaaaaaggagatgaaggggcggtatccgcgccatccttggccggaggac
ccgtggacggccacggcaacgcaccgcgccaaaccccgcgggacgtag
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