Stenotrophomonas sp. 169: ICJ04_18060
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Entry
ICJ04_18060 CDS
T08645
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
steq
Stenotrophomonas sp. 169
Pathway
steq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
steq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ICJ04_18060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
steq03400
]
ICJ04_18060
Enzymes [BR:
steq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ICJ04_18060
DNA repair and recombination proteins [BR:
steq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ICJ04_18060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QNR97332
UniProt:
A0A7H1ALR0
LinkDB
All DBs
Position
complement(4127069..4130719)
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AA seq
1216 aa
AA seq
DB search
MSHIATPLHEDPYLALPLQGVQLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFT
DAATQELRKRIRERLALAAQLVDSAPQEGESPDVALTRFVLQRHLQGGQERASALQRRLQ
VAADEIDLASIFTIHGFCTRVLREHALESGHTFDPPELLASERSLLEELAADLWRVHASD
PAAIDPLTWLWKSPDALASDLPALLKSLPLLPAPGPIGSDPIDALQQATRALAQAVREHG
DAFFQALCDAVDAKWLNGASYKLTWVQPVCSALREWALRGDETAPLDSERLPAILPEALA
AKTNKAHAGRAPVSPLQAPLQDYLHARDARQAWLRLQAINFLHAVREEARQRLATLKQVR
RVQTYDDLIEGVADALDGPHRRTLVRHLRAQYRIALVDEFQDTDDRQWSIFDSVFGDSAE
NRDDDLPPALFLIGDPKQAIYGFRGGDIHTYLNARREAQVAPALDRNFRSRPAVLRALQT
LYASAGADAFLDPAIQFEPVAAGGVRRDNDYLRNGVPAPGLTLRVLRNEGGKPFNAEPSR
EMACRACVADIHRVLLEARSGLAVLRDRPVAPGDIAVLVRSHREATLVQTGLAAVGIPAV
AAGKQSLFASAEAQDLRALLMALLQPADEGRLRAALATVLLGQDAAAIASMEREGDVQRG
FQSQLLQWRERWTRGGPFAVIADACAGQAERLLALIDGERRLTNYLQLGELLQEASAQAL
GMHGLLDWLQGQMAHADQNDEQQLLRLESDARRVQIITLHKSKGLEYPLVYLPFVGIEGG
APNTASHCTVHADDRRELHWKLDKDAAWDSATALRDQEQRAEDARLLYVGLTRAEHALWI
AVGDLAGLPKTRLAPMLADAAALAADPDIVVDDSGPPLRPPQLALESEGALPPVRRIDRR
VPHDWWVYSFTQLANADAGHDVDAAATEVPAPAADEPAGPELPLEPALPAGAEPDAVPVD
PRFMGSRFGNVLHDALENTDFAAWGLWQPGEPAPEGQDAVLRKALREEGYADTDLDEGIA
VLTPLVGHTLTVELPEGGALYSLPSEERRAEIEFHFAMQPTAVPALLQVLHRFGIVPARR
GFGLRRQLEGLMTGKIDLTYVRDGRWYVLDYKSNRLLGYAPALLQVAMQHSEYDLQALIY
TVALHRWLRFRLGNQYDYARDMGGIRYLFCRGLEVPGHGVHAARFDVALVDALDALFAGG
ETAQAALVSRVLGGVA
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgagccacatcgccacgcccttgcacgaagacccgtacctggcgctgccgctgcagggc
gtgcagctgatcgaggccagcgcgggtaccggcaagacgttcaccctggcgacgctgttc
acccgtctggtggtggagcagggtctgcgcatcggccagatcctcgccgtgaccttcacc
gatgcggcaacgcaggagctgcgcaagcgtatccgcgagcgtctggccctggcggcgcag
ctggtggacagcgcgccgcaggagggcgaatcgccggatgtggcgttgacccgcttcgtg
ctgcaacgccatctgcagggcggccaggaacgtgccagcgccctgcagcggcggttgcag
gtagcggccgatgaaatcgacctggcgtcgatcttcaccatccacggcttctgcacccgc
gtactgcgcgaacatgcgctggaaagcgggcacaccttcgacccgcccgaactgctggcc
agcgagcggagtctgctggaagaactggcggcggacctgtggcgcgtgcatgccagcgac
ccggccgcgatcgatccactgacatggctctggaaaagccccgatgcgctggcgtcggat
cttcccgcattgttgaagtcgttgcccctgctgcctgcgccgggcccgatcggatcggat
ccgatcgacgcgttgcagcaggccacccgcgcgctggcgcaggccgtacgcgagcacggt
gatgccttcttccaggccctgtgcgacgccgtcgatgccaagtggttgaacggggcgtcg
tacaagctgacctgggtgcagccggtctgcagcgcactgcgcgagtgggcactgcgcggg
gacgaaaccgcgccgctggacagcgagcggctgccggccatcctgcccgaggcactggcc
gccaagaccaacaaggcgcatgccggccgcgcaccggtgtcgccgttgcaggcgccgctg
caggactacctgcatgcgcgcgatgcacgacaggcgtggctgcgcctgcaggccatcaac
ttcctgcacgccgtacgcgaagaggcacggcagcgcctggccaccctgaaacaggtgcgg
cgggtgcagacctacgacgacctcatcgagggggtcgccgatgcactggacgggccgcac
cgtcgcaccctggtgcgccacctgcgtgcgcagtaccgcattgcgctggtggacgagttc
caggataccgatgatcgccaatggagcattttcgacagcgtgttcggcgactctgcggaa
aaccgcgatgatgacctgccacctgcgctgttcctgatcggcgatccgaagcaggcgatc
tacggcttccgtggcggtgatatccacacctatctgaacgcccggcgcgaggcgcaggtc
gcgccggcgctggaccgcaacttccggtcgcgcccggccgtgctgcgcgcgctgcagacg
ttgtacgccagcgccggcgctgatgcgttcctggaccccgccatccagttcgaaccggta
gcggccggtggcgtacgccgcgacaacgactacctgcgcaacggagtccctgcccccggg
ctcacgctgcgcgtgctgcgcaacgaaggaggcaagcctttcaacgcggagccgtcgcgc
gagatggcgtgccgggcctgcgtcgctgacatccaccgcgtgttgctggaggcgcgcagc
ggccttgccgtgttgcgcgatcgacccgtggcgcccggcgacatcgccgtgctggtgcgc
tcgcaccgcgaagccaccctggtgcagacgggcctggcggccgtgggcatccccgccgtg
gcggcgggcaagcagagtctgttcgccagcgccgaggcgcaggacctgcgcgcgctgctg
atggccctgctgcagccggccgatgaagggcgcctgcgtgcggcgctggccaccgtgctg
ctgggacaggatgcggccgccatcgccagcatggaacgcgagggcgatgtgcagcgcggc
ttccagtcgcagctgctgcagtggcgcgagcgctggacccgtggcgggccgttcgcggtc
atcgccgatgcgtgtgctggccaggccgagcgcttgctggcgctgatcgacggcgagcga
cgactgaccaattacctgcagctgggcgaactcctgcaggaagcatccgcgcaggcgttg
ggcatgcatggcctgctggactggctgcaggggcagatggcgcacgccgaccagaacgat
gagcagcagttgctgcgactggagtcggacgcgcgtcgtgtccagatcatcaccctgcac
aagagcaagggcctggaatatccgttggtctacctgcccttcgtcggcatcgagggcggg
gcgccgaacacggccagccattgcaccgtgcacgctgacgatcgccgggaactgcactgg
aagctggacaaggacgcggcgtgggacagcgcaacggcactgcgtgaccaggagcagcgt
gccgaagatgcgcgactgctgtatgtcggcctgacccgtgcagagcacgccctgtggatt
gccgtgggcgacctggccggcctgccgaagacccgcctggcgcccatgctggccgacgcg
gcggcgttggcggcagacccggatatcgtggtcgatgacagcggcccgccgctgcgcccg
ccgcagcttgcgctggaaagcgaaggggcgttgccaccggttcgccgcatcgaccgtcgc
gtgccgcatgactggtgggtctacagcttcacccagctggccaacgccgatgcaggccat
gatgtggacgcggcagcaaccgaagtacccgcaccggccgccgacgaaccggcgggtccg
gaactgccgctggagccggcgctgcctgccggtgcagagcccgacgcggtgccggtggat
ccccgcttcatgggcagccgcttcggcaacgtgctgcacgatgcgctggagaacaccgac
tttgcggcgtggggtctctggcagcctggcgaacctgcaccggaagggcaggacgcggtg
ctgcgtaaggcgctgcgcgaagagggctacgccgatacggacctggacgagggcatcgcc
gtgctgaccccgctggtcggccacacgctcaccgttgaattgccggaaggcggtgccctg
tacagcctgccatccgaggagcgccgcgccgaaatcgagttccacttcgccatgcagccg
acagccgtgcccgccctgctgcaggtgctgcatcgcttcggcatcgtgccggcccgccgc
ggcttcggcctgcgtcgccagctggaagggttgatgaccggcaagatcgatctgacctac
gtccgcgacggccgctggtacgtgctcgactacaagtcgaaccgccttctcggctacgca
ccggcgttgctgcaggtggccatgcagcacagcgaatacgatctgcaggcgctgatctat
accgttgcgctgcatcgctggctgcgtttccggctgggcaaccagtatgactacgcgcgc
gacatgggcggtatccgctacctgttctgtcgcggcctggaggtgccgggccacggtgta
cacgcggcgcgcttcgacgtggcactggtcgatgcgctggatgcgctgtttgccgggggc
gaaaccgcccaggccgcgctggtgtcccgcgtgctgggaggcgtcgcatga
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