Sphingopyxis terrae subsp. terrae: AOA14_02560
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Entry
AOA14_02560 CDS
T04307
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ster
Sphingopyxis terrae subsp. terrae
Pathway
ster03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ster00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOA14_02560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ster03021
]
AOA14_02560
03400 DNA repair and recombination proteins [BR:
ster03400
]
AOA14_02560
Enzymes [BR:
ster01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOA14_02560
Transcription machinery [BR:
ster03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOA14_02560
DNA repair and recombination proteins [BR:
ster03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOA14_02560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
DUF211
IDH
Motif
Other DBs
NCBI-ProteinID:
AMU93485
UniProt:
A0A142VW48
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All DBs
Position
532444..533502
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AA seq
352 aa
AA seq
DB search
MTVNIRNWQELKKPSNLEIKAGSDSKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMEGEGPKRLQLSATGPATVKAGDI
MVSGDIKVMNPDHVICHLDDGATLNMELVADTGKGYVPATANRPADAPIGLIPVDSLYSP
VRQVAYKVDNARIGQELDYDKLSLTVDTDGTVTPEDAVAYAARILQDQLQVFVHFEEAMN
DSGLIGMAAPSASTEESDVNQLNRFLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTEA
EMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaatatccggaactggcaggaattgaagaagcccagcaacctggaaatcaag
gctggcagcgacagcaagcgcaaggccaccttcgtcgccgaaccgctcgaacgcggcttt
ggcctgacgcttggcaacgcgctgcgccgcgtgctcctgtcgtcgctccagggtgcggcc
atcacgtcgatcaagatcgagaacgtcctgcacgaattctcgagcctggccggcgtgcgc
gaggacgtgaccgacatagttctcaacgtgaagcagatcgcgctcaagatggaaggcgaa
ggcccgaagcggctgcagctttcggcgaccggtcccgcgaccgtcaaggccggcgacatc
atggtgtcgggtgacatcaaggtgatgaaccccgatcacgtgatctgccacctcgacgac
ggggcgacgctgaacatggaactcgttgccgacaccggtaagggctatgttcccgcgacg
gccaaccgtccggccgacgcgccgatcggcctgatcccggtcgattcgctctactcgccg
gtgcgtcaggtcgcctacaaggtcgacaatgctcgcatcggtcaggaactggactatgac
aagctgtcgctgaccgtcgataccgacggcaccgtgaccccggaagatgccgtcgcctat
gctgcgcgcatcctccaggaccagcttcaggtcttcgtccacttcgaagaagcgatgaac
gacagcggcctcatcggcatggcggctccgtcggcttcgaccgaggaatcggacgtcaac
cagctcaaccgcttccttctcaagaaggtcgacgagctcgaactgtcggttcgttcggcc
aactgcctcaagaacgacaacatcatctacatcggcgacctggtccagaagaccgaggcc
gagatgctccgcacgccgaacttcggccgcaagtcgctcaacgagatcaaggaagtgctc
tcgtcgatgggtctgcgcctcggcatggacatccccggctggccgccggaaaacatcgag
gaaatggccaagaagctcgaacaggagctactgggttaa
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