Sphingopyxis terrae subsp. terrae: AOA14_17825
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Entry
AOA14_17825 CDS
T04307
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ster
Sphingopyxis terrae subsp. terrae
Brite
KEGG Orthology (KO) [BR:
ster00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ster03016
]
AOA14_17825
Enzymes [BR:
ster01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AOA14_17825
Transfer RNA biogenesis [BR:
ster03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AOA14_17825
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AMU96463
UniProt:
A0A142W379
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Position
3723016..3724209
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AA seq
397 aa
AA seq
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MQIHPLIESSEALHQFVDLIKGSDFIAVDTEFMRENTFWPELCLIQVADAHHAAAVDPMA
PGIDLAPLLDLLVDNEDVLKVFHAGGQDVEIIFNLTGKTPHPIFDTQIGQMALGQAEQVG
YSNLVEAWLGLQLDKGARFTDWSRRPLDKRQIDYAIGDVTHLAKIFPMMLKKLIKTGRGH
WLDEEMEKLADPSNYAIDPEKAWQRIKVPSRKLDALGRLKALAAWREREARNKNLPRGRI
VKDETLADLAAHPPKNQDGLGSVRGLSATWRSNDIGGRLMDALASAKPLPKDDMPDRAPR
GPGLGKEGALVADLLKLLLKIRSRELNAAARLIARSDDLEALAAGRRDDIPMMKGWRYDV
FGHAALDLVEGRVGFAVKNGKLVMSEIEAPAPAETDA
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattcatccgttaatcgagtccagcgaagcgcttcaccagtttgtcgacctgatc
aagggcagcgacttcatcgccgtcgacaccgaattcatgcgcgaaaacaccttctggccc
gaactctgcctgatccaggtggccgatgcacaccacgccgccgccgtcgatccgatggcg
ccgggcatcgacctcgccccgctgctcgacctgctcgtcgacaatgaagatgtgctcaag
gtcttccacgcgggcgggcaggatgtcgaaatcatcttcaacctgaccggcaagacgccg
cacccgatcttcgacacccagatcggccagatggcgctcggtcaggccgaacaggtcggc
tattcgaatctcgtcgaggcctggctcggcctgcagctcgacaagggcgcgcgctttacc
gactggagccgccggccgctcgacaagcggcagatcgactacgcgatcggcgacgtcacc
catctggccaaaattttcccgatgatgctcaaaaagctcatcaagacgggccgcggccac
tggctcgacgaggaaatggaaaagctcgccgatccgtccaactatgcgatcgaccccgaa
aaggcgtggcagcggatcaaggtgccgtcgcgcaagctggacgcgctcggccggctcaag
gctctcgccgcatggcgcgagcgcgaggcgcgcaacaagaatctgccgcgcggacgcatc
gtcaaggacgagacgctcgccgaccttgccgcgcatccgccgaaaaatcaggacggcctc
ggcagcgtgcgcggcctgtcggcgacatggcggtcgaacgacatcggcgggcggctgatg
gacgcgctcgcgagcgccaagccgttgcccaaggacgacatgcccgaccgcgccccgcgc
ggtccggggctgggcaaggaaggcgcgctcgtcgccgatctgctcaagctgctgctcaag
atccgctcgcgcgaactcaatgccgcggcgcggctcatcgcgcgcagcgacgatctcgaa
gcgctcgcggccgggcgccgcgacgatatcccgatgatgaagggctggcgctacgacgtg
ttcggccacgccgcgctcgaccttgtcgaaggccgcgtcggctttgcggtcaagaacggc
aagctggtgatgagcgagatcgaagcccccgccccggccgaaaccgacgcctga
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