Stenotrophomonas sp. ASS1: MG068_03740
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Entry
MG068_03740 CDS
T06051
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
stes
Stenotrophomonas sp. ASS1
Pathway
stes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MG068_03740 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stes03021
]
MG068_03740 (rpoC)
03400 DNA repair and recombination proteins [BR:
stes03400
]
MG068_03740 (rpoC)
Enzymes [BR:
stes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MG068_03740 (rpoC)
Transcription machinery [BR:
stes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MG068_03740 (rpoC)
DNA repair and recombination proteins [BR:
stes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MG068_03740 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QBL39673
LinkDB
All DBs
Position
814504..818727
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLQARQEHGDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIAATGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRSLENKKGEGMAFANIAEVKRAYDNR
VVELHARVKVRITEVVTDEDGNKQNKTSIVDTTIGRALLAEILPEGLPFALANTELTKKN
ISRLINSSYRQLGLKDTVVFADKLMYTGFAYATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLIMTPIVEGGDVVEPLKDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEAWVAKLEDAGVQTIKVRSTISCESAFGVCSRCY
GRDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FSNLKSVEHANGSLVAVSRSGEISVLDAHGRERERYKLPYGATITSKDGDAIKAGQTVAN
WDPHNHPIVSEVAGFIRFIDFVDGITVIEKTDELTGLASREITDPKRRGTQAKDLRPIVR
IVDAKGNDLSIPGTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAVLAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQVIVFE
GEHVTKGETIVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGSSKFLNGEQVERQRVIEENARLAARNELPAHFDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTSDNLRGLKENVIVGRLIPAGTGLAYHSNRRRGASGLTESE
MQTLAGTPAAVEAPVVEAEAEQASGEE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgttcgtggtccttcggcgaagtgaagaag
ccggaaaccatcaactaccgtaccttcaagccggaacgcgacggcctgttctgcgccgcc
atcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgaaaagtgcggcaccgaagtgaccctggccaaggtgcgtcgcgag
cgcatgggccacatcgacctggcttcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtgaccgagccgggcctgaccgccctggagcgccgccagctgctg
accgaagaacagtacctgcaggcccgccaggagcacggtgacgacttcgacgccgcgatg
ggcgccgaggccgtgtacgaactgctgcgcacgatcgacctgcagtcggaaatgacccgc
ctgcgcgaggaaatcgccgctaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggaatcgggcaaccgtccggagtggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtcccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgtaacaaccgcctgcgc
cgcctgctcgaactgagcgcgccggacatcatcgtgcgcaatgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgtggccgtgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggtccgtac
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgcttgagctgttcaagccgttc
gtcttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaggtcatccgcgagcatccg
gtgatgctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctgggtctgtactacatgacccgctcgctggaaaacaag
aagggcgagggcatggccttcgccaacatcgccgaagtcaagcgcgcctacgacaaccgc
gtggtggaactgcacgcgcgcgtcaaggtccgcatcaccgaagtggtgaccgacgaagac
ggcaacaagcagaacaagacctcgatcgtggacaccacgatcggtcgcgccctgctggct
gaaatcctgccggaaggcctgccgttcgcgctggccaacaccgagctgaccaagaagaac
atcagccgcctgatcaactccagctaccgccagctgggcctgaaggacacggtcgtgttc
gccgacaagctgatgtacaccggcttcgcctacgcgacccgcgccggcgtctcgatcggc
atcgatgacatgctgatcccggacgagaagaagggcatcctcaccgaggccgaagccgaa
gtgctggaaatccaggagcagtaccagtcgggcctggtcaccgccggcgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagcgcatcgccaaggcgatgatggacacc
atcggtaccgagaaggtggtcaatgccaagggtgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcgcgtggttcgcaggcgcagatccgtcagctg
gccggcatgcgtggcctgatggcccgcccggacggctcgatcatcgagacgcccatcaag
gcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacccgtcgtctg
gtcgacgtggcacaggacgtggtgatcaccgaggtggattgcggtaccaccgaaggcctg
atcatgaccccgatcgtggaaggcggcgacgtggtcgagccgctgaaggaccgcgtgctg
ggtcgcgtggttgccgaggacgtgttcctgccgggcaacgacgaagatccgatcgtcacc
cgcaacaccctgctggacgaagcctgggttgccaagctggaagatgccggcgtgcagacc
atcaaggtccgctcgaccatctcctgcgaatcggccttcggcgtctgctcgcgctgctac
ggccgcgacctggcccgtggccacctggtcaacatcggtgaagcggtcggcgtcatcgcc
gcccagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcgtcgcgagctgctgcggtcgacaacatcaccgtcaagaccaccggctcggtcaag
ttcagcaacctcaagtcggtcgagcatgccaacggctcgctggtggcagtgtcgcgctcg
ggcgaaatctcggtgctcgatgcccacggccgtgagcgtgaacgttacaagctgccgtac
ggtgcgaccatcacgtccaaggacggtgatgcgatcaaggctggccagaccgtggccaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggtttcatccgcttcatcgac
ttcgtcgacggcatcaccgtcatcgagaagaccgacgagctgaccggcctggcgtcgcgc
gaaatcaccgatccgaagcgtcgtggtacccaggccaaggacctgcgcccgatcgtgcgc
atcgtcgacgccaagggcaacgacctgtcgattccgggcaccgacctgccggcgcagtac
ctgctgccgccgcgctcgatcgtcaacctgcaggacggcgctgccgtcggtgtgggtgac
gtggtcgccaagattccgcaggaagcgtcgaagacccgcgacatcaccggtggtctgccg
cgcgtggccgatctgttcgaagcgcgcaagccgaaggatccggcggtgctggccgagcgt
tcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggttcggagcacgaagagctgatcccgaagtaccgccaggtcatcgtgttcgaa
ggcgagcatgtcaccaagggtgaaaccatcgtggacggcgagccgagcccgcaggacatc
ctgcgcctgctgggtgtcgaaccgctggccgcctacctggtgaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcacccgccagatg
ctgcgcaaggtcgagatcaccgatcagggcagcagcaagttcctgaacggcgaacaggtg
gagcgccagcgcgttatcgaggagaatgcccgccttgcagcccgcaatgagctgccggcg
cacttcgatccggtcctgctgggtatcaccaaggcgtcgctggcgaccgaatcgttcatc
tcggccgcttcgttccaggaaaccacccgcgtgctgaccgaagcggccgtccgcggcacc
tcggacaacctgcgtggcctgaaggaaaacgtcatcgtgggtcgcctgattccggccggt
accggcctggcgtaccacagcaaccgccgtcgcggcgcttccggcctcacagagtcggaa
atgcagacccttgccggcaccccggccgcggtcgaggcaccggtggttgaagccgaagct
gaacaggcgtcgggcgaagaatga
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integrated database retrieval system
