Stenotrophomonas sp. ASS1: MG068_05990
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Entry
MG068_05990 CDS
T06051
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stes
Stenotrophomonas sp. ASS1
Pathway
stes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MG068_05990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stes03400
]
MG068_05990
Enzymes [BR:
stes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MG068_05990
DNA repair and recombination proteins [BR:
stes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MG068_05990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Cas3-like_C_2
SWI2_SNF2
RecG_dom3_C
ERCC3_RAD25_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QBL40089
LinkDB
All DBs
Position
complement(1295929..1299393)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSRTSYPAPPLPRAGQLRAWWRAPASPTALAWYLAQAARAHDAPLLVIARDNHGANQLEA
DLHTLLGGDPALPVVAFPDWETLPYDRFSPHPDIISQRLSALHRLPALKRGLVIVPVQTL
LQQLAPRSYVIGGSFDLKVGQRLDLETEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVYP
MGAEEPLRVELLDEDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDEASIARVLATLRE
RFDVDTRRSSLYQDLKSGLAPAGVEYYLPLFFERTATLFDYLPEGSLPVVCAGAGEAAEA
FWAQTGERYEQRRHDVERPLLPPSALYLSPELLRERLNDAPRIEVWSADHARIADAHALG
DQPLPPLPVAAREAPAGDALKSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVVAD
LPSFLADDARFAIAVAPLEDGFALDDPRIAVLTERQLFPERAGSTRRTRRAGREPEAIIR
DLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEP
FAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKTTKEIKAELEKVAAGTIDVIVGTHR
LLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITQWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELSEL
VPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLVAPDRRSITPDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGTLPDLDAGEEVRGAEVELHVPAL
IPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDAAKHLFAIAELKLKAN
TLGIRKLDLGENGGRIVFESKPNIDPMAVIQLIQKQPNLYAMEGPDKLRIKHPLPLPEDR
FNAARALLTTLAPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtacctcataccccgccccgccgctgccgcgcgccggccagctccgcgcctgg
tggcgcgcccccgcatcgccgaccgccctggcctggtacctggcccaggccgcgcgtgcg
cacgacgccccgctgctggtgatcgcccgtgacaaccacggtgccaaccagctcgaagcc
gacctgcacaccctgctcggcggcgaccctgccctgccagtggttgccttcccggactgg
gaaaccctgccctacgaccgcttcagcccgcatccggacatcatttcgcagcgcctgtcc
gccctgcatcgcctgcccgcgctgaagcgcggcctggtgatcgtgccggtgcagaccctg
ctgcagcaactggccccgcgcagctatgtgatcggtggcagcttcgacctgaaggtcggc
cagcgcctggacctggaaaccgagaagcgccgcctggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccgggcgacttcgcggtgcgcggcggcctgctcgacgtgtacccg
atgggtgccgaggagccgctgcgggtggagctgctggacgaggacatcgactcgatccgt
gccttcgatccggaaagccagcgctcgctggacaaggtcgaggcggtgcacatgctgccg
ggccgcgaagtgccgatggacgaagccagcatcgcccgcgtgctggccacgctgcgcgaa
cgcttcgatgtcgatacccggcgcagttcgctgtaccaggacctgaaatccgggctggcc
ccggccggcgtcgagtattacctgccgctgttcttcgaacgcaccgccaccctgttcgac
tatctgcccgaaggcagcctgccggtggtctgcgccggtgccggcgaagccgccgaggcg
ttctgggcgcagaccggcgagcgatacgagcagcgccgccacgacgtcgaacggccgctg
ctgccgccgtcggcgctgtacctgtcgccggaactgctgcgcgagcgcctgaacgatgcc
ccgcgcatcgaagtgtggtcggctgaccacgcgcgcatcgccgatgcccatgcgttaggc
gaccagccgctgccgccgctgccggtggccgcgcgcgaggcccccgctggcgacgcgctg
aaatccttcctcggccattatccgggccgggtgctgatcgccgccgattcgcccgggcgt
cgcgaggccctgctggaagtgctgcaggccgccgagctgaagccgccggtggtggccgac
ctgcccagcttcctcgccgacgatgcgcgcttcgcgatcgcggtggcgccgctggaggat
ggcttcgcactggacgatccgcgcatcgcggtgctgaccgagcgccagctgttccccgag
cgcgccggcagcacccgccgcacgcgccgtgccggccgcgagccggaagcgatcatccgc
gacctcggcgaactgaccgagggtgcgccgatcgtgcacgaggaccatggcgtcggccgc
taccgcggcctgattgcgatggacgtcggcggcatgcccggcgagttcctggaaatcgaa
tatgccaagggtgaccgcctgtatgtgccggtcgcccagctgcacctgatcagccgctac
tccggtgcttcggcggaaaccgcgccgctgcattcgctgggcggcgaacagtggagcaag
gccaagcgcaaggccgccgagaaggtgcgcgacgtggctgcagagctgctggagatccag
gcccgccgccaggcccgtgctggcctggcgctgcaggtagaccgcgcgatgtacgagccg
ttcgcggccggtttcccgttcgaggaaacgccggaccagctggccgcgatcgacgccacc
ctgcgcgacctggccagcagccagccaatggaccgcgtggtctgcggcgacgtcggcttc
ggcaagaccgaggtggcggtgcgtgccgcgttcgccgccgccagtgccggcaagcaggtg
gccgtgctggtgccgaccacgctgctggccgaacagcactaccgcaacttccgcgaccgt
ttcgccgattacccgctgaaggtcgaggtgctgtcgcgcttcaagaccaccaaggaaatc
aaggccgagctggagaaggtcgccgccggcaccatcgacgtcatcgtcggtacccatcgc
ctgctgcagccggacgtgaagttcaaggacctgggcatggtcatcgtcgacgaggaacag
cgcttcggcgtgcgccagaaggaagcgctgaaggcgctgcgcgccaacgtgcacctgctg
accctgaccgccacgccgatcccgcgcacgctgaacatggccatggccggcctgcgcgac
ctgtcgatcatcgccacgccgccgccgaaccggctggcggtgcagaccttcatcacccag
tgggacaacgcgctgctgcgcgaagccttccagcgcgagctggcacgcggcggccagctg
tacttcctgcacaacgacgtggaaagcatcggccgcatgcagcgcgagctgtccgagctg
gtgcccgaggcgcgcatcggcatcgcccacgggcagatgcccgagcgcgagctggaaaag
gtgatgctggatttccagaagcagcgcttcaacgtgctgctgtcgaccacgatcatcgag
tcgggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgaccgcttcggc
ctggcccagctgcaccagctgcgcggccgtgtcggtcgttcgcaccaccgcgcctacgcc
tacctggtggcacctgatcgtcgttcgatcaccccggatgcggagaagcgcctggaagcg
atcgcctcgatggacgaactcggcgccggcttcaccctggccacgcacgacctggagatc
cgcggtgctggtgaactgctcggcgaggaccagagcgggcagatggccgaggttggcttc
agcctgtacaccgagctgctggagcgcgcggtgcgcagcatcaagcagggcacgctgccc
gacctggatgccggcgaagaagtgcgtggtgccgaggtcgagctgcatgtgccggcgctg
attccagaagactacctgccggacgtgcacacccgcctgaccctgtacaagcgcatttcc
agcgcgcgcgacagtgatgcgctgcgcgaactgcaggtggagatgatcgaccgcttcggc
ctgctgccggatgcggccaagcacctgttcgccatcgccgagctgaagctgaaggccaac
accctcggcatccgcaagctggacctgggcgagaacggtggccgcatcgtgttcgagtcc
aagccgaacatcgacccgatggcggtgatccagctgatccagaaacaacccaatctctac
gccatggaagggcctgacaagctgcgcatcaagcacccgctgccgttgccggaagaccgc
ttcaatgcggcccgcgcccttctgaccaccctcgccccgggttga
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