Stenotrophomonas sp. ASS1: MG068_06115
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Entry
MG068_06115 CDS
T06051
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stes
Stenotrophomonas sp. ASS1
Pathway
stes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MG068_06115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stes03019
]
MG068_06115
03009 Ribosome biogenesis [BR:
stes03009
]
MG068_06115
Enzymes [BR:
stes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MG068_06115
Messenger RNA biogenesis [BR:
stes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MG068_06115
Ribosome biogenesis [BR:
stes03009
]
Prokaryotic type
rRNA helicases
MG068_06115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF6702
Motif
Other DBs
NCBI-ProteinID:
QBL40114
LinkDB
All DBs
Position
1324389..1326347
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AA seq
652 aa
AA seq
DB search
MSQDSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNIDLQQIKPQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQ
QLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML
RQIERATRQPIEEMQLPSVEAVNDTRINKFTSRISETLGAGGLDFYRQLLERFENEQNVP
AIEVAAALAKMLQGDTPFLLQPPVRAPREERAPRERFDRGDRPERGDRFDRNERGPRFER
GPRRDDAEGGFEQRPRREVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESR
FIGRIDIHDDFSLLDLPAQMPPDVLSHLQKVWVSGQQLQMRALAPGEDTNPAPRPFKPRF
DRRGPGGPGGPRRGGPGGPGGHGGDRGGDRGGDRDSRPPRRDGFKPRGPRSF
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagattcccaagcgccgctgcagttcgcgcagctcggcctgtccgagcccgtg
atgcaggcggtcaccgccatcggctacgaaaccccgtcgccgatccaggccgccaccatc
ccggcgatgctggaaggccgcgacgtgctgggccaggcccagaccggcaccggcaagacc
gcagcgttcgcgctgccggttctgtccaacatcgatctgcagcagatcaagccgcaggcc
ctgatcctggcgccgacccgcgaactggccatccaggttgccgaggcgttccagtcctat
tcgtcgaagatcccgggcttccgcgtgctgccggtgtacggcggccagccgtacggccag
cagctgtcggccctgcgccgcggcgtgcacatcgtggtcggtacccccggccgcgtgatc
gaccacctggaccgcagcactctggacctgtccgagctgaagacgctggtgctggacgaa
gccgatgaaatgctgcgcatgggcttcatcgacgacgtcgaagccgtgctgaagaagctg
ccggagcagcgccaggtggccctgttttcggccaccatgccgccgcagatccgccgcatc
gcgcagacctacctgcaggacccggtggaagtgaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgttactggtgggtgagcggcatgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacgcgatgatcatcttcgcgcgcaccaaggccggc
accgaagaactggccagcaagctgcaggcccgtggcctggccgctgccgccatcaacggt
gacatgcagcaggcccagcgtgagcgcaccatcgccatgctgaaggaaggcaagctggac
atcctggtcgccaccgacgtggctgcccgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggccgtaccggt
cgtgccggccgcagcggcgaggcgatcctgttcgccaccccgcgcgagaagggcatgctg
cgccagatcgagcgcgccacccgccagccgatcgaagagatgcagctgccgagtgtggaa
gcggtcaacgacacccgcatcaacaagttcacctcgcgcatcagcgaaaccctcggcgcc
ggtggcctggacttctaccgccagctgctggagcgtttcgagaacgagcagaacgtgccg
gccatcgaagtggctgccgcgctggccaagatgctgcagggtgacaccccgttcctgctg
cagccgccggtgcgtgccccgcgtgaagagcgcgcaccgcgcgaacgcttcgaccgtggt
gaccgtccggaacgtggcgatcgcttcgaccgcaacgagcgtggtccgcgcttcgagcgt
ggcccgcgccgcgacgacgccgaaggtggcttcgagcagcgtccgcgccgtgaggttccg
ccgcgtggtgcgccggagcagggcatggagacctaccgcatttcggtcggccaccagcac
ggcgtgaagccggccaacatcgttggcgccattgccaacgaagccggtctggaaagccgc
ttcatcggccgcatcgacatccacgacgacttctcgctgctggacctgccggcacagatg
ccgccggacgtgctgtcgcacctgcagaaggtgtgggtgtccggccagcagctgcagatg
cgtgcgctggctccgggtgaagacaccaacccggccccgcgtccgttcaagccgcgcttc
gacaggcgtggtccgggcggcccgggtggcccgcgtcgcggtggcccgggcggtccgggt
ggccacggtggcgaccgcggcggtgaccgcggcggtgaccgcgacagccgcccgccgcgt
cgtgacggcttcaagccgcgcggcccgcgcagcttctaa
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