Stenotrophomonas sp. ASS1: MG068_13870
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Entry
MG068_13870 CDS
T06051
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
stes
Stenotrophomonas sp. ASS1
Pathway
stes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MG068_13870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stes03019
]
MG068_13870
03009 Ribosome biogenesis [BR:
stes03009
]
MG068_13870
Enzymes [BR:
stes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MG068_13870
Messenger RNA biogenesis [BR:
stes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MG068_13870
Ribosome biogenesis [BR:
stes03009
]
Prokaryotic type
rRNA processing factors
MG068_13870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
SE
Motif
Other DBs
NCBI-ProteinID:
QBL41550
LinkDB
All DBs
Position
2968859..2972095
Genome browser
AA seq
1078 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEY
GGGRHGFLPLKEISRDYFQAGVDHNKAGIRELLKEGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKDALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLNVWRAIAEAALSKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEEMYEHAR
EFMQQVMPQTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LANALKYDRARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHEAPIVIVADEQLHTPH
YTVTRLRENELGEESNKPSYQRGTPRKLPVHALTKGQLNIPPPAVTQVKHTSPAPVREEV
EPAAAAPAPVVAAPVAAAPSGGVIGWLKRVFGGEPAPAPAPAAPVARQQQDGGRKDRNKD
RNKDRKDRRDDNRGNGGNGNAQQQKDGGNRKERGEQRSKDGRNGNNGNAQQQPQQGKQKE
PQQKDGQHQPQQQNKPRNEQQGQNPQQPKLKQPKQPRPQQDGDKPAEKPQRNAAEAPAEA
VTAAAAVAATAVAANTVTAQEATAPVAPVAAAPAEAAAPVDTTANAASETEVVAVAGEEA
ATDANGEQTGEGATRRRRGRRGGRRRRRGGAENAAGSDALGDDQDDGEDGDDAEPSVDST
AGTAPVAAAQPARSQPEFDFDDEAEPAAADAAKPVRAAAAVAAAPVAVVSSAVVEAAAPV
VAEVQAPVEAAAKTEAASSPVQTSMLDAIDAATPAQPVAAAAPVTEAKPVAVEAAPVVEA
APVIEAKPAAVKAAPVVEAKPDIVEAAAAVEAKPVAVEAAPVVEATPVVEPVVAAEQPVA
PVAVEAAPIEAAAPVAEAVVTPSIDPVADGHADAAAQAAEAKTDEEDEEAAKRTPPAN
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggctgaagagctgcgtgttgccatcgtggat
ggccagtcgttgtatgacatcgacatcgagcagccgtcgaaggaacagaagaagtccaac
atctacaagggccggatcttccgcatcgagccctcgctggaagcggccttcgttgaatac
ggtggcggccgccatggcttcctgccgctgaaggaaatctcccgcgattacttccaggcc
ggtgtcgaccacaacaaggccggcatccgcgaactgctgaaggaaggccaggagatcgtt
gtccaggtcgacaaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggtgtctcccgt
cgcatcgagggcgaagaccgggccgccctgaaggacgccctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgtaccgccggcgtcggccgcgatgcggaagagctgcag
tgggatctggattacctgctcaacgtctggcgcgccatcgccgaagccgcattgagcaag
ccggccccgttcctgatctaccaggaatcgcgcctgatcgtgcgcgccctgcgtgactac
ctgcgcgccgacatcggcgagatcctggtggacaccgaggagatgtacgagcacgcccgc
gagttcatgcagcaggtgatgccgcagaccctgcgcaagctcaagcattacaaggacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaaggcgcctacgagcgcaac
gtgcgcctgccgtcgggcggctcgatcgtggtcgaccagaccgaagcgctgaccgccgtc
gacgtgaactcctcgcgcgccaccaagggcagcgacatcgaggacaccgccttccagacc
aacctggaagcggccgaggaagtggcccgccagctgcgcctgcgtgacctgggtggcctg
gtggtgatcgatttcatcgacatggcctccaacaagcaccagcgtgaggtcgagaaccgc
ctggccaacgcgctgaagtacgaccgtgcgcgcgtgcaggtcggccgcatctcgcgcttc
ggcctgttggaaatgagccgccagcgcctgcgcccgagcctgggcgagtccagccagatc
gtctgcccgcgttgcgacggccacggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtcgccgaagagcatgcgatgaaggagaacaccgggcaggtgctggtgcag
gccccggtggagatcgccaactacctgttgaacgaaaagcgcagcgccctgcgtgagatc
gagcagcgccacgaggcgccgatcgtgatcgtcgccgacgagcagctgcacaccccgcac
tacaccgtcacccgcctgcgtgagaacgagctgggtgaagagagcaacaagcccagctac
cagcgcggcaccccgcgcaagctgccggtgcacgccctgaccaagggccagttgaacatc
ccgccgccggccgtgacccaggtcaagcacacctcccccgctccggtgcgcgaggaagtg
gagccggccgcagcggcaccggccccggtcgtggcagcgccggttgcagcggccccgagc
ggcggcgtgatcggttggctcaagcgcgtgttcggtggcgaaccggcgccggcaccggca
ccggcggctccggtcgcccgccagcagcaggacggcggccgcaaggaccgcaacaaggat
cgcaacaaggaccgcaaggaccgtcgcgacgacaaccgtggcaacggcggcaacggcaac
gcgcagcagcagaaggacggcggcaaccgcaaggagcgcggtgagcagcgcagcaaggac
ggccgcaacggtaacaacggcaatgcccagcagcagccgcagcagggcaagcagaaggag
ccgcagcagaaggatggccagcaccagccgcagcagcagaacaagccgcgcaacgagcag
cagggccagaacccgcagcagccgaagctgaagcagccgaagcagccgcgcccgcagcag
gacggtgacaagccggccgagaagccgcagcgcaacgccgccgaagcaccggccgaagcc
gtgaccgcggctgcagccgtggccgccacggcggtcgccgccaatacggtgaccgcgcag
gaagcgaccgcaccggttgcgccggtggccgccgctccggccgaagccgcagcaccggtc
gacaccactgccaacgccgccagcgagaccgaggtggttgcggttgccggtgaagaggct
gcaaccgacgccaatggcgagcagaccggcgaaggcgcgacccgccgtcgtcgcggccgt
cgcggtggccgtcgccgtcgtcgtggtggcgccgagaacgccgccggcagcgacgctctg
ggcgatgaccaggatgatggtgaagacggtgatgacgccgagccgagcgtcgacagcact
gccggcactgcgccggtcgctgctgcgcagccggcccgttcgcagccggagttcgacttc
gatgacgaagccgaaccggccgctgccgacgccgcaaagccggtccgtgctgccgccgct
gttgccgccgcaccggttgccgtggtgagcagcgctgtggtcgaagccgccgccccggtc
gtggctgaagtgcaggccccggtcgaagctgctgcgaagactgaagcggcgtcctcgccg
gtgcagaccagcatgctcgatgccatcgacgccgcgaccccggcccagccggtagccgct
gccgcgccggtgaccgaagcaaagccggtcgcggttgaagccgccccggtggttgaagcc
gctccggtgatcgaagcgaagccggcggcggtcaaggctgcgccggtcgttgaagccaag
ccagatatcgttgaagccgctgcggcggttgaagccaagccggtggccgttgaggccgcg
ccggtggttgaagccacgccggtcgtcgagcccgtcgtggccgccgaacagccggtcgct
ccggtggcggtggaagccgcgccgatcgaggccgctgccccggtcgccgaagcggtggtg
acgccgtcgatcgacccggtcgccgatggccatgccgacgctgcggcccaggctgcagaa
gccaagaccgatgaagaagacgaagaggccgccaagcgcacgccgccggcgaactga
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