Stenotrophomonas sp. ASS1: MG068_15340
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Entry
MG068_15340 CDS
T06051
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
stes
Stenotrophomonas sp. ASS1
Brite
KEGG Orthology (KO) [BR:
stes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
stes03009
]
MG068_15340
Enzymes [BR:
stes01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MG068_15340
Ribosome biogenesis [BR:
stes03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MG068_15340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
RrnaAD
Methyltr_RsmB-F
MTS
Cons_hypoth95
PCMT
Methyltransf_11
TRM5-TYW2_MTfase
TRAM
Methyltransf_23
Methyltransf_15
Methyltransf_12
UPF0020
Methyltransf_32
PrmA
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QBL41815
LinkDB
All DBs
Position
complement(3286605..3287939)
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AA seq
444 aa
AA seq
DB search
MARSRSRIDRTPFQTEILDLSHDGRGVARREGEGGKVTFVSGALPGEVVMAEQTARSRHF
DEARTVEVLQASPQRVTPKCPHFGTCAGCVLQHLDEDQQIVAKQRVLMDNLERIGHVKPG
TVLAPLVGESWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLSQCLTVIPEIGTKVE
ALSTFIESLDGKRDIPQIEFIAGDQAVVLTVRHLQPLSDADRVAWAAFGQQHGFVIYLQS
GGVDTVQPLDGQGVPLSFRLAPWDVELAFRPLDFIQVNAKLNEKMIAHALDLLEPGEDER
VLDLFCGLGNFTLPLARRVREVVGVEGDAGLVARARENAERNGLTNAQFFSADLTQDQRS
TPWMRQGFDKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTL
VSAGAMDMFPHTAHVESIAVFEKR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgatcccgctcccgcatcgaccgtaccccgttccagaccgagatcctcgacctc
agccatgatggtcgcggtgtcgcccgccgtgaaggcgagggcggcaaggtcaccttcgtc
agcggcgccctgccgggcgaggtggtcatggccgaacagaccgcccgcagccgccatttc
gacgaagcgcgtacggtggaagtgctgcaggcctcgccgcagcgcgtcaccccgaagtgc
ccgcacttcggcacctgcgccggctgcgtgctgcagcacctggacgaagaccagcagatt
gtcgccaagcagcgcgtgctgatggacaacctggagcgcatcggccacgtgaagccgggc
accgtgctggcgccgctggtcggtgagagctggggctaccggcgcaagggtcgcttctcg
gtgcgccgggtcgaaaagaaggacaagaccctggtcggcttccgtgaacaggatccgcga
ttcgtcgccgacctcagccagtgcctgaccgtgatccccgagatcggcaccaaggtcgag
gcgctgtccaccttcatcgaatcgctcgatggcaagcgtgacatcccgcagatcgaattc
atcgctggcgaccaggccgtggtcctgaccgtgcgccacctgcagccgctcagcgatgcc
gaccgcgtggcctgggccgccttcggccagcagcatggcttcgtgatctacctgcagtcc
ggtggcgtggataccgtgcagccgctggacgggcagggcgtgccgctgtcgttccggctg
gcgccgtgggacgtggagctggcgttccgtccgttggacttcatccaggtcaacgccaag
ctcaatgagaagatgatcgcccacgccctggacctgctggagccgggtgaggacgagcgt
gtgctggacctgttctgcggcctgggcaacttcaccctgccgctggcgcgccgcgtgcgc
gaagtggtcggtgtggaaggcgatgctggcctcgtcgcgcgggcccgtgagaatgccgag
cgcaacggcctgaccaacgcccagttcttcagcgccgacctcacccaggaccagcgcagc
acgccgtggatgcgccagggcttcgacaagctgctcttggatccgccgcgctcgggcgcg
atcgaagtgctgcagcagctgccgctgaagcagttcaagcgcatcgtctacgtcagctgc
cacccgggttcgctggcacgcgatgccggctatctggtcaacgaacagggcttcaccctg
gtcagtgccggtgccatggacatgttcccgcacaccgcacacgtggaaagcatcgcggta
ttcgagaagcgctga
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