Stenotrophomonas sp. ASS1: MG068_19010
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Entry
MG068_19010 CDS
T06051
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
stes
Stenotrophomonas sp. ASS1
Pathway
stes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MG068_19010 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stes03021
]
MG068_19010 (rho)
03019 Messenger RNA biogenesis [BR:
stes03019
]
MG068_19010 (rho)
Transcription machinery [BR:
stes03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MG068_19010 (rho)
Messenger RNA biogenesis [BR:
stes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MG068_19010 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
S1CSD-TOTE-2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBL42498
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All DBs
Position
4115462..4117231
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AA seq
589 aa
AA seq
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MSDNTSETGSADAPAEKRVRKPRVSKAAAPAAAETSAAPAQPTLPLAAAPEAPAPAAAAP
APSAPAAEAPASSGGGEGGEGRESGQPRQQNHQGGGQNQGQNPYNQNGQQGQQGQQGQGQ
GQGNRRDRFRNRRDRDRNNRFRDDGLPNDGGEQQPFVPRPHANVPEGFPVYSLSDLKRMP
AQKLLEIAEQLQISEGVARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAAE
ASYLAGPDDTYISPSQIRRFNLRTGDHISGRIRFPKDGERYFALNIVDTINGEPIEASKN
KVLFENLTALFPRRRFTLERGNGSSEDITGRILDLMAPQGKGQRSLIVSQPKAGKTMMMQ
QVATAITTNHPDVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIER
AKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAARNVEE
GGSLTIIATALVDTGSKMDEVIYEEFKGTGNSEVHLSRRIAEKRVFPAIDINRSGTRRED
LLIEPELLQKIWILRKLLHPMDEMAAMEFLLDKMKNTKSNDEFFGSMKR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgataacacttccgaaaccggcagcgccgatgcgcccgccgaaaagcgcgtgcgc
aagccccgcgtgagcaaggccgccgctccggcagccgccgaaaccagcgccgctccggcg
cagccgaccctgccgctggccgccgcgcccgaagcgccggcaccggccgccgccgccccc
gcaccgagcgcgcccgccgccgaggcccctgccagcagtggcggcggcgaaggtggtgag
ggtcgcgaatccggccagccgcgccagcagaaccaccaggggggcggccagaaccagggc
cagaacccgtacaaccagaacggccagcagggccagcagggccagcagggccaggggcaa
ggtcagggcaaccgccgcgaccgcttccgcaaccgccgcgaccgtgaccgcaacaaccgc
ttccgcgacgatggcctgcccaacgacggcggcgagcagcagccgttcgtgccgcgcccg
cacgccaacgtgcccgagggcttcccggtctactcgctgagcgacctcaagcggatgccg
gcacagaagctgctggaaatcgccgagcagctgcagatctccgaaggcgtggcacgcgcc
cgcaagcaggatgtgatcttcgccctgctgaaggtactgacccgccacggtgacggcgtc
gccgccgacggcgtgctggaaatcctgccggacggcttcggcttcctgcgcgcggccgaa
gccagctacctggccggcccggacgatacctacatctcgcccagccagatccgccgcttc
aacctgcgcaccggcgaccatatctccggccgcatccgcttcccgaaggacggcgagcgc
tacttcgcgctgaacatcgtcgacaccatcaacggcgagccgatcgaagcgtcgaagaac
aaggtgctgttcgagaacctgaccgccctgttcccgcgccgccgcttcaccctggagcgc
ggcaacggttcgtcggaagacatcaccggccgcatcctcgacctgatggcgccgcagggc
aagggccagcgctcgctcatcgtgtcgcagccgaaggccggcaagacgatgatgatgcag
caggtcgccaccgccatcaccaccaaccacccggacgtgcacctgatcgtgctgctgatc
gacgagcgcccggaagaagtgaccgaaatgcagcgcaccgtgcgcggcgaggtcatcagc
tcgaccttcgacgaaccggccgcgcgccacgtgcaggtggccgaaatggtcatcgagcgc
gccaagcgcctggtcgagcacaagaaggacgtggtcatcctgctcgactcgatcacccgc
ctggcccgtgcctacaacaacgtggtgccgagctcgggcaaggtgctgaccggtggtgtg
gacgccaacgccctgcatcgcccgaagcgcttcttcggtgccgcgcgcaacgtggaagaa
ggcggcagcctgaccatcatcgccaccgcactggtcgacaccggttcgaagatggacgag
gtgatctacgaagagttcaagggcaccggcaacagcgaagtgcacctgagccgccgcatc
gctgaaaagcgtgtgttcccggccatcgacatcaaccgttccggcacccgccgcgaagac
ctgctgatcgaaccggagctgctgcagaagatctggatcctgcgcaagctgctgcatccg
atggatgaaatggccgcgatggagttcctgctggacaagatgaagaacaccaagtccaac
gacgagttcttcggttcgatgaagcgctag
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