Stenotrophomonas sp. P2112: ACEPA4_03945
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Entry
ACEPA4_03945 CDS
T10817
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
stez Stenotrophomonas sp. P2112
Pathway
stez03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stez00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACEPA4_03945 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stez03021
]
ACEPA4_03945 (rpoC)
03400 DNA repair and recombination proteins [BR:
stez03400
]
ACEPA4_03945 (rpoC)
Enzymes [BR:
stez01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACEPA4_03945 (rpoC)
Transcription machinery [BR:
stez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACEPA4_03945 (rpoC)
DNA repair and recombination proteins [BR:
stez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACEPA4_03945 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XGK36456
LinkDB
All DBs
Position
855803..860026
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLQARQEHGDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIAATGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRSLENKKGEGMAFANIAEVKRAYDNR
VVELHAKVKVRITEVVTDEDGNKQNKTSIVDTTIGRALLAEILPEGLPFALANVELTKKN
ISRLINSSYRQLGLKDTVVFADKLMYTGFAYATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLIMTPIVEGGDVVEPLKDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEAWVAKLEDAGVQTIKVRSTISCESAFGVCSRCY
GRDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FSNLKSVEHANGSLVAVSRSGEISVLDAHGRERERYKLPYGATITSKDGDAIKAGQTVAN
WDPHNHPIVSEVAGFIRFIDFVDGITVIEKTDELTGLASREITDPKRRGTQAKDLRPIVR
IVDAKGNDLSIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAVLAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQVIVFE
GEHVTKGETIVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGSSKFLNGEQVERQRVIEENARLSARNELPARFDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTKDNLRGLKENVIVGRLIPAGTGLSYHSSRRRGATGLTDSE
MQTLAGTPAAVESPVVEAEAEQASGEE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgttcgtggtccttcggcgaagtgaagaag
ccggaaaccatcaactaccgtaccttcaagccggaacgcgatggcctgttctgcgccgcc
atcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgaaaagtgcggcaccgaagtgaccctggccaaggtgcgccgcgag
cgcatgggccacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcgtacgtggtgaccgagccgggcctgaccgccctggagcgccgccagctgctg
accgaggaacagtacctgcaggcgcgccaggaacacggtgacgacttcgacgccgccatg
ggcgccgaggccgtctacgaactgctgcgcacgatcgatctgcagtccgagatgacccgc
ctgcgcgaggaaatcgccgctaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggaatcgggcaaccgtccggaatggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtcccgctggatggcggccgtttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctcgaactgagcgcgccggacatcatcgtgcgcaatgaaaagcgcatgctgcag
gaatcggtcgatgcactgctggacaacggccgccgcggtcgtgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgtac
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgcttgagctgttcaagccgttc
gtcttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggctgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaggtcatccgcgagcatccg
gtgatgctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggta
ctgatcgagggcaaggccatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtcgccggccaacggtgagccgatcatc
gtgccgtcgcaggacgtcgtgctgggtctgtactacatgacccgctcgctggagaacaag
aagggcgagggcatggccttcgccaacatcgccgaagtcaagcgcgcctacgacaaccgc
gtggtggaactgcacgccaaggtcaaggtccgcatcaccgaggtggtgaccgacgaagac
ggcaacaagcagaacaagacctcgatcgtggacaccacgatcggtcgcgccctgctggct
gaaatcctgccggaaggcctgccgttcgcgctggccaatgtcgagctgaccaagaagaac
atcagccgcctgatcaactccagctaccgtcagctcggcctgaaggacacggtcgtgttc
gccgacaagttgatgtacaccggtttcgcctatgcgacccgcgccggcgtctcgatcggc
atcgacgacatgctgatcccggacgagaagaagggcatcctcaccgaggccgaagccgaa
gtgctggaaatccaggagcagtaccagtcgggcctggtcaccgccggcgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagcgcatcgccaaggcgatgatggacacc
atcggtaccgagaaggtcgtcaatgccaagggcgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcgcgtggttcgcaggcgcagatccgtcagctg
gccggcatgcgtggcctgatggcccgcccggacggctcgatcatcgagacgcccatcaag
gcgaacttccgtgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacccgtcgcctg
gtcgacgtggcgcaggacgtggtgatcaccgaggtggattgcggtaccaccgaaggcctg
atcatgaccccgatcgtggaaggcggcgacgtggtcgagccgctgaaggatcgcgtgctg
ggccgcgtggttgccgaggacgtgttcctgccgggcaacgacgaagatccgatcgtcacc
cgcaacaccctgctggacgaagcctgggttgccaagctggaagatgccggcgtgcagacc
atcaaggtccgctcgaccatctcctgtgaatcggccttcggtgtctgctcgcgctgctac
ggccgcgacctggcccgtggccacctggtcaacatcggtgaagcggtcggcgtcatcgcc
gcccagtccatcggtgagccgggtacccagctgaccatgcgtacgttccatatcggtggt
gcggcgtcgcgagctgctgcggtcgacaacatcaccgtcaagaccaccggctcggtcaag
ttcagcaacctcaagtcggtcgagcacgccaacggctcgctggtggcggtgtcgcgctcg
ggcgaaatctcggtgctcgatgcgcacggccgtgagcgtgagcgttacaagctgccgtac
ggtgcaaccatcacgtccaaggacggcgatgcgatcaaggcgggccagaccgtggccaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggcttcatccgcttcatcgac
ttcgtcgacggcatcaccgtcatcgagaagaccgacgagctgaccggcctggcgtcgcgc
gaaatcaccgatccgaagcgtcgtggtacccaggccaaggacctgcgcccgatcgtgcgc
atcgtcgacgccaagggcaacgacctgtcgatcccgggtaccgacctgccggcgcagtac
ctgctgccgccgcgttcgatcgtcaacctgcaggacggcgccccggtgggcgtgggcgat
gttgtcgccaagatcccgcaggaagcgtcgaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacctgttcgaagcgcgcaagccgaaggatccggcggtgctggccgagcgt
tcgggcatcatcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggttcggagcacgaagagctgatcccgaagtaccgccaggtcatcgtgttcgaa
ggcgagcatgtcaccaagggtgaaaccatcgtggacggcgagccgagcccgcaggacatc
ctgcgcctgctgggtgtcgagccgctggctgcctacctggtcaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcacccgccagatg
ctgcgcaaggtcgagatcaccgaccagggcagcagcaagttcctgaacggcgaacaggtg
gagcgccagcgcgttatcgaggagaatgcgcgcctgtcggcccgcaacgaactgccggcg
cgcttcgatccggtcctgctgggtatcaccaaggcctcgctggcgaccgaatcgttcatc
tcggcggcctccttccaggagaccacccgagtgctgaccgaggctgccgtccgcggtacc
aaggacaacctgcgtggcctgaaggaaaacgtcatcgtcggccgcctgattccggccggt
accggcctgtcctaccacagcagccgccgtcgcggcgcgaccggtctcaccgactcggaa
atgcagaccctggccggcaccccggctgcggtcgagtccccggtggttgaagccgaagct
gaacaggcctcgggcgaagaatga
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integrated database retrieval system
