Stenotrophomonas sp. P2112: ACEPA4_06280
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Entry
ACEPA4_06280 CDS
T10817
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stez Stenotrophomonas sp. P2112
Pathway
stez03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACEPA4_06280 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stez03400
]
ACEPA4_06280 (mfd)
Enzymes [BR:
stez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACEPA4_06280 (mfd)
DNA repair and recombination proteins [BR:
stez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACEPA4_06280 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Cas3-like_C_2
SWI2_SNF2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XGK36890
LinkDB
All DBs
Position
complement(1346073..1349537)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSRTSYPAPPLPRAGQLRAWWRAPASPTALAWYLAQAARAHDAPLLVIARDNHGANQLEA
DLQTLLGGDPALPVVAFPDWETLPYDRFSPHPDIISQRLSALHRLPALKRGLVIVPVQTL
LQQLAPRSYVIGGSFDLKVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFP
MGADEPLRVELLDEDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDEASIARVLATLRE
RFDVDTRRSSLYQDLKSGLAPAGVEYYLPLFFERTATLFDYLPDGSLPVVCTGAYEASVA
FWAQTADRYEQRRHDVERPLLPPSALYLSPELLRERLNDAPRIEVWSADHARIADAHALG
DQPLPPLPVAAREAPAGDALKSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVVAD
LPSFLADGARFAIAVAPLEDGFALDDPRIAVLTERQLFPDRAGSTRRPRRAGREPEAIIR
DLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLDIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEP
FAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKTSKEIKAELEKVAAGTIDVIVGTHR
LLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITQWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELSEL
VPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLITPDRRAITPDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGKLPDLDAGEEVRGAEVELHVPAL
IPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDAAKHLFAIAELKLKAN
TLGIRKLDLGENGGRIVFESKPNIDPMAVIQLIQKQPNLYAMEGPDKLRIKHPLPLPEDR
FNAARALLTTLAPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtacctcataccccgccccgccgctgccgcgcgccggccagctccgcgcctgg
tggcgcgcccccgcctcgccgaccgccctggcctggtacctggcccaggccgcgcgtgcg
catgacgccccgctgctggtgatcgcccgtgacaaccacggtgccaaccagctcgaagcc
gacctgcagaccctgcttggcggtgacccggccctgccggtggtcgccttcccggactgg
gaaaccctgccgtacgaccgcttcagcccgcatccggacatcatctcgcagcgcctgtcc
gccctgcaccgcctgccggcgctgaagcgcggcctggtgatcgtgccggtgcagaccctg
ctgcagcagctggccccgcgcagctatgtgatcggtggcagcttcgacctgaaagtcggc
cagcgcctggacctggaagccgagaagcgtcgcctggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccgggtgacttcgcggtgcgcggcggcctgctcgacgtgttcccg
atgggcgccgacgagccgctgcgggtagaactactggacgaggacatcgactcgatccgt
gccttcgatccggaaagccagcgttcgctggacaaggtcgaggcggtgcacatgctgccc
ggccgcgaagtgccgatggacgaggccagcatcgcacgcgtgctggccacgctgcgcgag
cgtttcgatgtggatacccggcgcagttcgctgtaccaggatctgaagtccgggctggcc
ccggccggcgtcgagtactacctgccgctgttcttcgaacgcaccgcaaccctgttcgac
tacctgcccgacggcagcctgccggtggtctgtaccggtgcgtatgaagcatccgtcgcg
ttctgggcgcagaccgcggaccgctatgagcagcgccgccatgatgtggagcgcccgctg
ctgccgccttcggcgttgtacctgtcgccggagctgctgcgcgagcgcctgaacgatgcc
ccgcgcatcgaggtgtggtcggctgaccacgcgcgcatcgccgatgcccacgcgctgggt
gaccagccgctgccgccgctgccggtggccgcgcgcgaggcccccgctggcgacgcgctg
aaatccttcctcggccactatccgggccgggtactgatcgccgccgattcgcccgggcgt
cgcgaggccctgctggaagtgctgcaggccgccgaactgaagccgccggtggtggccgac
ctgcccagcttcctcgccgacggtgcgcgcttcgcgatcgcggtggcaccgctggaagat
ggcttcgcactggacgatccgcgcatcgcggtgctgaccgagcgccagctgttccccgac
cgcgccggcagcacccgccgcccgcgtcgcgccggccgcgagccggaagcgatcatccgc
gacctcggcgagctgaccgagggtgcgccgatcgtgcacgaggaccatggcgtcggccgc
taccgtggcctgatcgcgatggacgtcggcggcatgcccggcgagttcctcgacatcgaa
tatgccaagggcgaccgcctgtatgtaccggtcgcccagctgcacctgatcagccgctac
tccggcgcttcggcggaaaccgcaccgctgcattcgctcggtggcgagcagtggagcaag
gccaagcgcaaggccgccgagaaggtgcgcgatgtcgccgccgaactgctggaaatccag
gcccgccgccaggcgcgtgccggcctggcactgcaggtcgaccgcgcgatgtacgagccg
ttcgccgccggtttcccgttcgaggaaacccccgaccagctggctgcgatcgatgccacc
ctgcgcgacctggccagcagccagccgatggaccgcgtggtctgcggcgacgtcggcttc
ggcaagaccgaggtggcggtgcgcgctgcatttgctgcggccagtgccggcaagcaggtg
gcggtgctggtgccgaccacgctgctggccgagcagcattatcgcaacttccgcgaccgt
ttcgccgattacccgctgaaggtcgaagtgctgtcgcgcttcaagaccagcaaggaaatc
aaggccgaactggagaaggtggccgctggcaccatcgacgtcatcgtcggcacccatcgc
ctgctgcagcctgacgtgaagttcaaggacctgggcatggtcatcgtcgacgaggagcag
cgattcggcgtgcgccagaaggaggcgctgaaggcgctgcgcgccaacgtacacctgctg
acgctgaccgccacgccgatcccgcgcacgctcaacatggccatggccggcctgcgcgac
ctgtcgatcatcgccacgccgccgccgaaccggctggcggtgcagaccttcatcacccag
tgggacaacgcgctgctgcgcgaagccttccagcgcgagctcgcgcgcggtggccagctg
tacttcctgcacaacgatgtggagagcatcggccgcatgcagcgcgagctgtccgagctg
gtgccggaggcacgcatcggcatcgcccacgggcagatgcccgagcgcgaactggaaaag
gtgatgctggatttccagaagcagcgtttcaacgtgctgctgtcgaccacgatcatcgaa
tcgggcatcgacatccccaacgccaacaccatcatcatcaaccgtgccgaccgtttcggc
ctggcccagctgcaccagctgcgtggccgcgtcggccgttcgcaccaccgtgcctacgcc
tacctgatcacccccgaccgtcgcgcgatcacccccgacgccgagaagcgcctggaagcg
atcgcctcgatggacgagctgggcgccggcttcaccctggccacccacgatctggaaatc
cgcggcgccggtgaactgcttggcgaggaccagagcgggcagatggccgaggttggcttc
agcctgtataccgagctgctggaacgcgcggtacgcagcatcaagcagggcaagctgccc
gacctggatgccggtgaggaagtgcgcggcgccgaggtcgagctgcatgtgccggcactg
atcccggaagactacctgccggacgtgcacacccgcctgaccctgtacaagcgcatttca
agcgcgcgcgacagcgatgcactgcgcgaactgcaggtggagatgatcgaccgcttcggc
ctgctgccggatgcagccaagcacctgttcgccatcgccgagctgaagctgaaagccaat
acgctgggcatccgcaagctcgacctgggcgagaacggcggccgcatcgtgttcgagtcc
aagccgaacatcgatccgatggcggtgatccagctgatccagaaacaaccgaacctctat
gccatggaagggcccgacaagctgcgcatcaagcacccgctgccgttgccggaagaccgc
ttcaacgcggcccgcgcccttctgaccaccctcgccccgggttga
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