Stenotrophomonas sp. P2112: ACEPA4_06405
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Entry
ACEPA4_06405 CDS
T10817
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stez Stenotrophomonas sp. P2112
Pathway
stez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACEPA4_06405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stez03019
]
ACEPA4_06405
03009 Ribosome biogenesis [BR:
stez03009
]
ACEPA4_06405
Enzymes [BR:
stez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACEPA4_06405
Messenger RNA biogenesis [BR:
stez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACEPA4_06405
Ribosome biogenesis [BR:
stez03009
]
Prokaryotic type
rRNA helicases
ACEPA4_06405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF6702
Motif
Other DBs
NCBI-ProteinID:
XGK36915
LinkDB
All DBs
Position
1374578..1376524
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AA seq
648 aa
AA seq
DB search
MSQDSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNIDLQQIKPQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQ
QLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML
RQIERATRQPIEEMQLPSVEAVNDTRINKFTSRITETLGAGGLDFYRQLLERFENEQNVP
AIEIAAALARMLQGDTPFLLQPPVRAPREERAPRERFDRGDRPERGDRFDRNERGPRFER
GPRRDDAEGGFEPRPRREVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESR
FIGRIDIHDDFSLLDLPAQMPPDVLSHLQKVWVSGQQLQMRPLAAGEEINPAPRPFKPRF
DKRGPGGPGGPRRGGPGGPGGHGGDRGGDRDSRPPRRDGFKPRGPRSF
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagattcccaagcgccgctgcagttcgcgcagctcggcctgtccgagcccgtg
atgcaggcggtcaccgccatcggctacgaaaccccgtcgccgatccaggccgccaccatc
ccggcgatgctggaaggccgcgacgtgctgggccaggcccagactggtaccggcaagacc
gctgcgttcgcactgccggtactgtccaacatcgacctgcagcagatcaagccccaggcc
ctgatcctggcgccgacccgcgaactggccatccaggttgccgaggcgttccagtcctat
tcgtcgaagatcccgggcttccgcgtgctgccggtgtacggcggccagccctacggccag
cagctgtcggcgctgcgccgtggcgtgcacatcgtggtcggcacccccggccgcgtgatc
gatcacctggaccgcagcaccctggacctgtccgagctgaagaccctggtgctggacgaa
gccgatgaaatgctgcgcatgggcttcatcgacgatgtggaagccgtgctgaagaagctg
ccggagcagcgccaggtggccctgttttcggccaccatgccgccgcagatccgccgcatc
gcgcagacctacctgcaggacccggtggaagtgaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgctactggtgggtgagcggcatgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacgcgatgatcatcttcgcgcgcaccaaggccggc
accgaagaactggccagcaagctgcaggcgcgtggcctggccgctgccgccatcaacggt
gacatgcagcaggcccagcgcgagcgcaccatcgccatgctgaaggaaggcaagctggac
atcctggtcgccaccgacgtggccgcccgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgagagctacgtgcaccgcatcggccgtaccggc
cgtgccggccgcagcggtgaggcgatcctgttcgccaccccgcgcgagaagggcatgctg
cgccagatcgagcgcgctacccgccagccgatcgaagagatgcagctgccgagcgtggag
gcggtcaacgacacccgcatcaacaagttcacctcgcgcatcaccgaaacgctcggcgcc
ggcggcctggacttctaccgccagctgctggagcgcttcgagaacgagcagaacgtgccg
gccatcgagatcgcggccgcgctggccaggatgctgcagggcgataccccgttcctgctg
cagccgccggtgcgtgccccgcgtgaagagcgcgcgccgcgcgagcgcttcgaccgtggc
gaccgcccggagcgtggcgatcgcttcgaccgcaacgagcggggtccgcgcttcgagcgt
ggcccgcgtcgcgacgacgccgaaggtggtttcgagccgcgtccgcgccgcgaggttccg
ccgcgtggtgcgccggagcagggcatggagacctaccgtatttcggtcggccaccagcac
ggcgtgaagccggccaacatcgtcggcgccatcgccaacgaagccggcctggaaagccgt
ttcatcggccgcatcgacatccacgacgacttctcgctgctggacctgccggcacagatg
ccgccggacgtgctgtcgcacctgcagaaggtgtgggtgtccggccagcagctgcagatg
cgtccgctggcggccggtgaagagatcaacccggccccgcgtccgttcaagccgcgcttc
gacaagcgtggtccgggcggccccggtggcccgcgtcgtggtggtccgggtggtccgggt
ggccatgggggcgaccgcggcggtgaccgcgacagccgcccgccacgtcgtgatggcttc
aagccgcgcggcccgcgcagcttctaa
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