Stenotrophomonas sp. P2112: ACEPA4_09610
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Entry
ACEPA4_09610 CDS
T10817
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
stez Stenotrophomonas sp. P2112
Pathway
stez02020
Two-component system
stez02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
stez00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACEPA4_09610 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACEPA4_09610 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stez03021
]
ACEPA4_09610 (rpoN)
Transcription machinery [BR:
stez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACEPA4_09610 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_3
Sigma70_r4
HTH_17
HTH_31
HTH_Crp_2
HTH_23
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
XGK37504
LinkDB
All DBs
Position
complement(2071459..2072868)
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AA seq
469 aa
AA seq
DB search
MKAALSTQLGQQLHLTPQLLQSIRLLQLDGLHLEQEIQRLLDSNPLLEIEEAEAPAADAT
EVSATTLETAAFDELPESSMWDVAGASWQDGDDDRMARIAAGESTDPQLRVLQRLALDMD
DSELAVAAFWLDHCDEAGYLQAPLAQLQLLASAQFDIAAEGVEAIRQQLLHGEPAGMAAQ
DLREGLQAQLRSLHGVVPARHLAARILAGALEALAAHDYPALARQHDAEIDDVREAVRLI
LSLQPRPGDSLLPERNAVVVPDVVAWHADGQWKVALNPATSRRVSINSQYEQALAETSEA
APALREMLQEARWFSRGLSMRYDTLLRTARVIVERQAAFLVSGEEAMAPLTLKEVAEEIG
MHESTVSRITTGKFLQTPRGTFELKHFFAVRLEGASVSGQAVKAMVRRLIDAEPAGRPLA
DEAIAGLLSRQGVNIARRTVAKYREQLDIAPARERRRLSARQPQLARVG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctgcactctcgacccagctgggccaacaacttcacctcaccccgcagctgctg
cagtcgatacggctgttgcagcttgatggcctgcacctggaacaggaaatccagcgcctg
ctggactccaacccgctgctggagatcgaagaggccgaagcgccggccgctgatgccacc
gaggtcagcgccaccacgctggaaaccgccgcgttcgacgagctgccggagtcttcgatg
tgggacgtggccggcgccagctggcaggacggcgacgacgaccgcatggcgcgcattgcc
gccggtgagtcgaccgaccctcagctgcgcgtgctgcagcgcctggcgctggacatggac
gacagcgaactggcggtggccgcgttctggctcgaccactgcgacgaggcaggctacctg
caggcgccactggcgcagctgcagctgctggccagcgcccagttcgacatcgccgccgaa
ggcgtcgaggccatccgccagcagctgctgcacggtgaaccggctggcatggctgcgcag
gacctgcgcgaaggcctgcaggcacaactgcgcagcctgcacggcgtggtccccgcgcgt
cacctggccgcccgcatcctcgctggcgcgctcgaggcactggccgcgcacgactacccc
gccctcgcccgccagcacgacgccgagatcgacgacgtgcgcgaggcggtgcgcctgatc
ctctcgctgcagccgcgccccggcgacagcctgctgcccgaacgcaacgctgtggtagtg
ccggacgtcgtcgcctggcacgccgatgggcaatggaaggtggcactgaacccggccacc
agccgccgcgtctcgatcaacagccagtacgaacaggcgctggccgaaaccagcgaagcc
gcgccggcactgcgcgagatgctgcaggaggcgcgctggttcagccgcggcctgtcgatg
cgctacgacaccctgctgcgcaccgcgcgcgtgatcgtcgagcgccaggccgccttcctg
gtgagtggcgaagaggcgatggcgccgctgaccctgaaggaagtggccgaggaaatcggc
atgcacgagtccaccgtctcgcgcatcaccaccggcaagttcctgcagaccccgcgcggc
accttcgaactgaagcacttcttcgccgtgcgcctggaaggcgccagcgtctccggccag
gcggtgaaagccatggtccgccgcctgatcgacgccgaacccgccggccgtccgctggcc
gacgaggccattgccggcctgctgtcacgccagggggtgaacattgcccgccgaaccgtc
gcaaaataccgagaacaactggatatcgccccggcccgcgaacggcgccggctcagcgcc
aggcaaccgcagctggcccgggtgggctga
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