Stenotrophomonas sp. P2112: ACEPA4_14715
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Entry
ACEPA4_14715 CDS
T10817
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
stez Stenotrophomonas sp. P2112
Brite
KEGG Orthology (KO) [BR:
stez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
stez03009
]
ACEPA4_14715 (rlmD)
Enzymes [BR:
stez01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACEPA4_14715 (rlmD)
Ribosome biogenesis [BR:
stez03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACEPA4_14715 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
RrnaAD
Methyltr_RsmB-F
MTS
Cons_hypoth95
PCMT
Methyltransf_11
TRM5-TYW2_MTfase
TRAM
Methyltransf_23
Methyltransf_15
Methyltransf_12
UPF0020
Methyltransf_32
PrmA
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
XGK34697
LinkDB
All DBs
Position
complement(3155517..3156851)
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AA seq
444 aa
AA seq
DB search
MARSRSRTDRTPFQTEILDLSHDGRGVARREGEGGKVTFVSGALPGEMVMAEQTARSRHF
DEARTLEVLQASPQRVTPKCPHFGTCAGCVLQHLDEDQQIVAKQRVLMDNLERIGHVKPG
TVLAPLIGESWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLSQCLTVIPEIGTKVE
ALSTFIETLDGKRDIPQIEFIAGDQAVVLTVRHLQPLSDADRAAWAAFGQQHGFVIYLQS
GGVDTVQPLDGQGVALSFRLAPWDVELAFRPLDFIQVNAKLNEKMIAHALDLLQPGEDER
VLDLFCGLGNFTLPLARRVREVVGVEGDAGLVARARENAERNGLANAQFFSADLTQDQRS
TAWMRQGFDKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTL
VSAGAMDMFPHTAHVESIAVFEKR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgatcccgctcccgcaccgaccgtaccccgttccagaccgagatcctcgacctc
agccatgatggtcgcggtgtcgcccgccgtgaaggcgagggcggcaaggtcaccttcgtc
agcggcgccctgcccggcgagatggtgatggctgaacagactgcccgcagccgccatttc
gacgaggcgcgcaccctggaagtgctgcaggcctcgccgcagcgggtgacccccaagtgc
ccccatttcggtacctgcgccggctgcgtgctgcagcacctggacgaagaccagcagatc
gtcgccaagcagcgcgtgctgatggataacctggagcggattggccatgtgaagccgggc
accgtgcttgcgccgctgatcggcgagagctggggctaccgccgcaagggccgcttctcg
gtgcgccgggtcgagaagaaggacaagaccctggttggcttccgtgaacaggatccgcgt
ttcgtcgccgacctcagccagtgcctgaccgtgattccggagatcggcaccaaggtcgag
gcgttgtccaccttcatcgaaacgctcgatggcaagcgtgacatccctcagatcgaattc
atcgccggtgaccaggccgtggtcctgaccgtgcgccacctgcagccactcagcgatgcc
gaccgcgcggcctgggccgccttcggccagcagcatggcttcgtgatctacctgcagtcc
ggtggcgtggacaccgtgcagccgctggacgggcagggcgtggcgctgtcgttccggctg
gcgccgtgggatgtcgagctggcgttccgcccgctggatttcatccaggtcaacgccaag
ctcaacgagaagatgatcgcccacgccctggacctgctgcagccgggtgaggacgagcgc
gtgctggacctgttctgcggcctgggcaacttcaccctgccgttggcccgccgtgtgcgt
gaagtggtgggtgtggaaggcgatgccggcctcgtcgcgcgtgcgcgtgagaacgcggag
cgcaacggcctggcgaacgcgcagttcttcagcgccgacctgacccaggaccagcgcagc
acggcgtggatgcgccagggcttcgacaagctgctgctggatccgccgcgctcgggcgcg
atcgaagtgctgcagcagctgccgctgaagcagttcaagcgcatcgtctacgtcagctgc
cacccgggctcgctggcgcgcgatgccggctatctggtcaacgaacagggcttcaccctg
gtcagcgccggtgccatggacatgttcccgcacaccgcgcacgtggaaagcatcgcggta
ttcgaaaagcgctga
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