Stenotrophomonas sp. P2112: ACEPA4_19340
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Entry
ACEPA4_19340 CDS
T10817
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stez Stenotrophomonas sp. P2112
Brite
KEGG Orthology (KO) [BR:
stez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stez03016
]
ACEPA4_19340
Enzymes [BR:
stez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACEPA4_19340
Transfer RNA biogenesis [BR:
stez03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACEPA4_19340
Prokaryotic type
tRNA splicing ligases
ACEPA4_19340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
XGK35576
LinkDB
All DBs
Position
4198703..4199923
Genome browser
AA seq
406 aa
AA seq
DB search
MDTQYNYQWLHAEGSTPIKGWVNGVPLEAQAHEQLRNIAAIPFVGPWVAVMPDVHLGKGA
TVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRANDLPDDLRQLRNSIERSIPVGNGRGG
EHQRMPDSIHTRLVQSGLAVGLEKIKDRHRRIRTDKLDRQLGTLGGGNHFIELCLDETDT
VWVMLHSGSRGTGNLIGTYFIEKAREELARRVLGFHLPDKDLAFFMEGEPLFDDYVEAVS
WAQDYARQNREAMMSRVLAEMRHRLPKFQLAAMAVNCHHNYVQKETHHGQELLVTRKGAV
SAREGELGIIPGSMGTRSYIVRGKGNADSFNSCSHGAGRVMSRGAARQQITLAQHREATA
HVECRKDSGVLDESPAAYKSIDDVMAAQLDLVDVVHTLRQVLCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggacactcaatacaattatcaatggctgcatgccgagggcagcacgccgatcaaaggc
tgggtcaacggcgtgccactggaggcgcaggcgcatgagcagctgcgcaacatcgccgcg
atcccgttcgtcgggccgtgggtggcggtgatgccggacgtgcacctgggcaagggcgcg
accgtcggctcggtgatcccgacccgcggtgcaatcatcccggcggcggtcggcgtcgac
atcggctgcggcatggcggccgtgcgcaccacgctgcgcgccaacgacctgcccgatgac
ctgcggcagctgcgcaacagcatcgagcgcagcatcccggtcggcaacgggcgcggcggc
gagcatcagcgcatgcccgacagcatccacacccggctggtgcagtccgggctggccgtc
ggcctggagaagatcaaggacaggcaccgcaggatccgcaccgacaagctcgaccgccag
ctcggtacgctgggtggcggcaaccacttcatcgaactgtgcctggacgagacggatacg
gtgtgggtgatgctgcacagcgggtcgcgcggtaccggcaacctgatcggtacctacttc
atcgagaaggcgcgcgaggaactggcccggcgcgtgctgggcttccacctgccggacaag
gacctggcgttcttcatggaaggcgagccgctgttcgatgactacgtcgaagccgtgtcg
tgggcacaggactacgcccggcagaaccgcgaggcgatgatgtcgcgcgtgctggccgag
atgcgccaccggctgccgaagttccagctggcggcgatggcagtgaactgccaccacaac
tacgtgcagaaggaaacgcaccacggacaggagctgctggtgacgcgcaagggggccgtc
agtgcccgcgagggtgagctgggcatcattcccggcagcatgggcacgcgcagttacatc
gtgcgtggcaagggcaacgcggacagcttcaacagctgcagccacggtgccggccgggtg
atgagccgtggcgccgcgcgccagcagatcacgctggcccagcatcgcgaggccaccgcg
catgtggaatgccgcaaggacagcggcgtgctggacgagtcaccggccgcgtacaagtcg
atcgacgatgtgatggccgcgcagttggacctggtcgacgtggtgcacacgctgcgccag
gtgttgtgcgtgaaggggtaa
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