Streptomyces sp. FR-008: SFR_2979
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Entry
SFR_2979 CDS
T11627
Name
(GenBank) Heat shock protein 60 family chaperone GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
stfr Streptomyces sp. FR-008
Pathway
stfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFR_2979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stfr03019
]
SFR_2979
03110 Chaperones and folding catalysts [BR:
stfr03110
]
SFR_2979
03029 Mitochondrial biogenesis [BR:
stfr03029
]
SFR_2979
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stfr04147
]
SFR_2979
Enzymes [BR:
stfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SFR_2979
Messenger RNA biogenesis [BR:
stfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SFR_2979
Chaperones and folding catalysts [BR:
stfr03110
]
Heat shock proteins
HSP60 / Chaperonin
SFR_2979
Mitochondrial biogenesis [BR:
stfr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SFR_2979
Exosome [BR:
stfr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SFR_2979
Exosomal proteins of other body fluids (saliva and urine)
SFR_2979
Exosomal proteins of breast cancer cells
SFR_2979
Exosomal proteins of colorectal cancer cells
SFR_2979
Exosomal proteins of bladder cancer cells
SFR_2979
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
CbiA
Motif
Other DBs
NCBI-ProteinID:
ALM39594
LinkDB
All DBs
Position
complement(3057858..3059480)
Genome browser
AA seq
540 aa
AA seq
DB search
MAKIIAFDEEARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIE
LEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPMALKRGIE
KAVEAVSSALLEQAKDVETKEQIASTASISAADTQIGELIAEAMDKVGKEGVITVEESQT
FGLELELTEGMRFDKGYISAYFATDMERMEASLDDPYILIVNSKIGNVKDLLPLLEKVMQ
SGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLGDIAILTGGTVIS
EEVGLKLENAGLDLLGRARKVVITKDETTIVDGAGDSDQVNGRVAQIRAEIENSDSDYDR
EKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALLQA
SSVFEKLELEGDEATGAAAVKLALEAPLKQIAVNGGLEGGVVVEKVRNLSVGHGLNAATG
EYVDMIAEGILDPAKVTRSALQNAASIAALFLTTEAVIADKPEKAAAAAPGGMPGGDMDF
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggccaagatcatcgcgttcgacgaggaggcgcggcgcggtctcgagcgcgggatgaac
cagctcgccgacgccgtcaaggtcacccttggccccaagggccgcaacgtcgtcctcgag
aagaagtggggcgcccccacgatcaccaacgatggtgtctccatcgccaaggagatcgag
ctcgaagacccgtacgagaagatcggcgccgagctggtcaaggaggtcgcgaagaagacg
gacgacgtcgccggtgacggcacgacgaccgcgaccgtcctggcccaggcgctcgtccgc
gagggtctgcgcaacgtcgccgcgggtgccaacccgatggccctgaagcgcggcatcgag
aaggccgtcgaggccgtctcctccgccctgctggagcaggcgaaggacgtggagaccaag
gagcagatcgcctccaccgcctccatctccgccgccgacacccagatcggcgagctgatc
gccgaggccatggacaaggtcggcaaggaaggcgtcatcaccgtcgaggagtcccagacc
ttcggtctggagctggagctcaccgagggtatgcgcttcgacaagggctacatctcggcg
tacttcgccaccgacatggagcggatggaggcgtcgctcgacgacccgtacatcctcatc
gtcaactccaagatcggcaacgtgaaggacctgctcccgctgctggagaaggtcatgcag
tcgggcaagccgctgctgatcatcgccgaggacgtcgagggcgaggccctgtcgaccctg
gtggtcaacaagatccgtggcaccttcaagtccgtcgccgtcaaggccccgggcttcggc
gaccgccgcaaggccatgctcggtgacatcgccatcctcacgggcggcacggtcatctcc
gaggaggtcggcctcaagctggagaacgccggtctcgacctgctgggccgcgcccgcaag
gtcgtcatcaccaaggacgagaccacgatcgtcgacggtgccggcgacagcgaccaggtc
aacggccgcgtcgcgcagatccgcgccgagatcgagaacagcgactcggactacgaccgc
gagaagctccaggagcgtctggcgaagctggccggcggcgtggccgtcatcaaggccggt
gccgccaccgaggtcgagctgaaggagcgcaagcaccgcatcgaggacgcggtgcgcaac
gccaaggccgccgtcgaggagggcatcgtcgccggtggtggcgtggctctgctccaggct
tcctcggtcttcgagaagctcgagctcgagggcgacgaggccaccggtgccgccgccgtc
aagctggccctggaggccccgctcaagcagatcgccgtcaacggtggcctggagggcggc
gtggtcgtggagaaggtgcgcaacctctccgtgggccacggcctgaacgccgcgaccggc
gagtacgtcgacatgatcgccgagggcatcctcgacccggccaaggtgacgcgttccgcg
ctccagaacgccgcgtcgatcgccgccctcttcctcaccaccgaggccgtcatcgccgac
aagccggagaaggccgccgccgctgccccgggtggcatgcccggcggtgacatggacttc
tga
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