Streptomyces sp. Go40/10: KBP30_12265
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Entry
KBP30_12265 CDS
T11184
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
stgo Streptomyces sp. Go40/10
Pathway
stgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBP30_12265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stgo03019
]
KBP30_12265
Messenger RNA biogenesis [BR:
stgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KBP30_12265
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UFR01911
LinkDB
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Position
complement(2973309..2974994)
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AA seq
561 aa
AA seq
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MSHPHPELGPPPPLPKGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGNRERIGPFDCEFIAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLTDSTNAEVPGFTPHERDISNVLRQVFAGARKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVDGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVAVDLVEGKAKISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VMDASTGKITGGPHVQARGSGIEDSAFTDVIPKITEVLERSAQDGVVEPHQLQQLVRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggcccgccgccgccgctccccaagggcggcctgcgc
gtcaccccgctcggcggcctcggtgagatcggccggaacatgacggtcttcgagtacggc
ggccgcctgctgatcgtcgactgcggagtgctcttcccggaggaggagcagcccggaatc
gacctgatcctgccggacttctcgtccatccgggaccgtctggacgacatcgagggcatc
gtcctcacccacggccacgaggaccacatcggcggcgtccccttcctgctccgcgagaag
ccggacatcccgctgatcggctccaagctcacgctggccctcatcgaggccaagctgcag
gagcaccggatccggccgtacaccctggaggtggcggagggcaaccgcgagcgcatcggc
cccttcgactgcgagttcatcgccgtcaaccactccatcccggacgccctggccgtcgcc
atccgcacccccgccggcatggtggtccacaccggcgacttcaagatggaccagctcccg
ctggacaaccgcctcaccgacctgcacgccttcgcgcggctgagcgaggagggcatcgac
ctcctcctcaccgactccacgaacgccgaggtccccgggttcaccccgcacgagcgcgac
atctccaacgtcctgcggcaggtcttcgccggcgcccgcaagcggatcatcgtggcgagc
ttcgccagccacgtccaccgcatccagcagattctggacgcggcccacgagtacggccgc
cgggtcgccttcgtcggccggtccatggtccgcaacatgggcatcgcccgggacctcggc
tacctgaaggtgccgccgggcctggtggtcgacgtcaagacgctggacgacctgcccgac
cacgaggtggtcctggtctgcacgggctcccagggcgagccgatggcggccctgtcccgc
atggccaacagggaccaccagatccggatcgtcgacggcgacacggtcatcctggcctcg
tccctcatccccgggaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtgcacgtctccggccacgcgtcggcg
ggcgagctgctgtacttctacaacatctgccgcccgaagaacctcatgccggtccacggc
gagtggcgccacctgcgggccaacgccgagctgggcgccctgaccggcgtcccgcacgac
cggatcgtcatcgccgaggacggcgtggcggtcgacctggtcgagggcaaggccaagatc
tccggcaaggtccaggccggttacgtctacgtcgacggcctctcggtcggcgacgtcggc
gagccggcactgaaggaccgcaagatcctcggtgacgagggcatcatctcggtcttcgtg
gtcatggacgcctccaccggcaagatcaccggcggcccgcacgtccaggcgcgcggctcc
ggcatcgaggactcggccttcaccgacgtcattccgaagatcaccgaggtcctggagaga
tccgcccaggacggcgtcgtggagccccaccagctccagcaactcgtccgccggaccctc
ggcaagtgggtctcggacacctatcgccgcaggccgatgatcctgcccgtggtcgtcgag
gtctga
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