Streptomyces sp. Go40/10: KBP30_26565
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Entry
KBP30_26565 CDS
T11184
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
stgo Streptomyces sp. Go40/10
Pathway
stgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBP30_26565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stgo03019
]
KBP30_26565
03009 Ribosome biogenesis [BR:
stgo03009
]
KBP30_26565
Enzymes [BR:
stgo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KBP30_26565
Messenger RNA biogenesis [BR:
stgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KBP30_26565
Ribosome biogenesis [BR:
stgo03009
]
Prokaryotic type
rRNA processing factors
KBP30_26565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UFR04503
LinkDB
All DBs
Position
6187950..6192668
Genome browser
AA seq
1572 aa
AA seq
DB search
MLEPTEPTQGSEPNTPSDTLPPRRRRRAASRPAGPPTAAAEAPVEVTVPAIPAAEADEVA
EVTEDIASAEALEAAESAGAEGTEEVAATGAPAAEEPAPAARPRRRVARRASAPTGSPTS
AEAAETVVPAAASAEPEKAAVPEAGAVVVGEEAAPRRTRRRATRSVSAPTAAPAETVAAA
ETPATEAPAAEIPAVEAPAAEEPAPAARPRRRVARRASAPTGSPTSAEAAETVVPAAAAA
EPAAAEAPAAEEPAAEAPAVEEAAPARPRRRATRRASAPAGAPKGAEEAPAATQVTQASA
AAAVAEPEAAPAAAEAAETVEAAAEEAAPRRTRRRATRRATAPASEEAAEVKAEEAPAAT
QVTQAPAAAAVAEPEAAPAAAEAAEAVEAAAEEAAPRRTRRRATRRATAPATTPAAEEAV
AGETGETGKTEEAAVTAHTPEVPATTHTTEPAPATQAPAQAPAAAEAGAPRRARRRVVRA
ASGFAAPQAAESAEGETPRRPGRPAVAVFQPPVFTEPKFQTPERAAAEAAAEVAEAEEPE
EYAEERAETGARRRRRRRGAAAEETRPVEAVTEDEEDTEEAEEAPESAEDLAEGDEGDET
EGAEGYEESGSRRRRRRGGRRRRRGDAAEGESGEGLDADADELAAEQAAQDAEDTAEQEE
EDAEEAHGEEGGASTAGSRRRRRRRRRAGDSAVDAEPSSDDPERTVVKVREPRKPSEPSD
EVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQHGDRTQIG
VLEDGVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEA
LGMANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISR
KLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIQKKAKNGG
NAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWQTIHGYVAHVAPDLAGRLSRWTSE
VDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGQGGNLEETVTR
NNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS
LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQATANGGGGKRKKRGRGAEAPEPA
HEHVHETAAVAVETGEAVEPEVETAAEVAAEAGTPVALPAPEFAPDEELYSSVAEAEAAA
TRGRTRRRASRRASAPAGAPKAEKAERAPRAERASRAQRAAEAEQAAETEVPAEVPTAQD
VTAEQAAARPVQPEPAAEALAEPVAAEDQVVPAPQAEAPAEEAAPKGRTRRRATRRASAP
AGAPAGAEAAVVTVPETAPAAEAPAAEAPAAEAPAEQAAPVAEAPAGKPAEAEAAAAPAR
PRRRAVRKATAPTASEEAAVVVVPSAPATEETPAAEAPVAEAPAAEAPVAEAPAGEVTAE
EVAEATAPAKKAARKTAAKKTAAKKTAAKKTTAKKTAAKKTTAKKAAKTAKTAAAKSTAK
KTTTVSTAGDEG
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaacccactcagggttccgaaccgaacactccgagcgacaccctg
cccccgcgcaggcgtcgccgtgccgcctcccgcccggcgggcccgcccaccgcggccgcg
gaggcgcccgtggaggtcaccgtgccggccataccggccgctgaggccgacgaggtcgcc
gaggtgaccgaggacatcgcgtccgccgaggcccttgaggccgccgagagcgccggggcc
gagggcaccgaagaggtcgccgccaccggggcgcccgctgccgaggagcccgctcccgcg
gcgcgtccgcgtcgccgggtggcccgccgtgcgtcggcgcccacgggttcgccgacgtcc
gccgaggccgccgagacggtcgtaccggccgccgcgtccgccgagccggagaaggccgcc
gttcccgaggccggcgccgtcgtcgtcggcgaggaggccgcaccgcgccgcacccgccgc
cgggccacgcgcagtgtttccgcgccgaccgccgcccctgccgagaccgtcgcggccgcc
gagacgcccgcgacggaagcgcccgccgcggagattcccgccgtcgaggcgcccgctgcc
gaggagcccgctcccgccgcgcgtccgcgtcgccgggtggcccgccgtgcgtcggcgccc
acgggttcgccgacgtccgccgaggccgccgagacggtcgtaccggccgccgctgccgcc
gagcccgctgccgccgaggcacccgctgccgaggagcccgccgccgaagcgcctgccgtc
gaggaggccgcccccgcgcgtccgcgccgtcgtgccacgcgccgggcgtccgcgcccgcc
ggtgcgccgaagggcgccgaggaggctccggccgccactcaggtcactcaggcctcggcc
gccgctgccgtcgccgagcccgaggccgctccggctgccgccgaggccgcggagaccgtg
gaggctgccgccgaggaggccgctccccgtcgtacgcgccgtcgtgccacccgccgggcc
accgcgcccgcgagcgaggaagccgccgaggtgaaggccgaggaggctccggccgccact
caggtcactcaggctccggccgccgctgccgtcgccgagcccgaggccgctccggctgcc
gccgaggccgcggaggccgtggaggctgccgccgaggaggccgctccccgtcgtacgcgc
cgtcgtgccacccgccgggccaccgcgcccgccaccacccccgccgccgaggaagccgta
gccggtgagaccggcgagaccggcaagaccgaggaggccgcggtgaccgcccacaccccg
gaggtccccgcgaccacgcacaccaccgagcccgcccccgccacgcaggcccccgcgcag
gccccggccgccgccgaggccggtgcgccgcgtcgggcccgtcgccgggtcgtccgtgcc
gcgtccgggttcgccgcgccgcaggccgccgaatccgccgagggcgagaccccgcgccgc
cccggccgtcccgccgtggccgtcttccagccgccggtcttcaccgagcccaagttccag
accccggagcgggccgccgccgaggccgccgccgaggtcgccgaggcggaggagccggag
gagtacgccgaggagcgcgccgagaccggtgcccgccggcgccgtcgccgccgtggcgca
gccgccgaggagacccggcccgtcgaggccgtcaccgaggacgaggaggacaccgaggag
gccgaggaggcccccgagtccgccgaggacctcgccgagggcgacgagggcgacgagacc
gagggcgccgagggttacgaggagtccggctcgcgccgccgtcgccgccgtggcggacgc
cgtcgccggcgcggtgacgcggccgagggcgagtccggcgagggcctggacgccgacgcg
gacgaactggccgccgagcaggccgcgcaggacgccgaggacaccgccgagcaggaggaa
gaggacgccgaggaggcccacggcgaggagggcggcgcctccaccgccggcagccgccgc
cgtcgtcgccgtcgtcgccgggccggtgacagcgccgtcgacgccgagccgtcctccgac
gacccggagcgcacggtcgtcaaggtccgcgagccgcgcaagcccagcgagccgtccgac
gaggtccagtccatcaagggctcgacccgtctggaggccaagaagcagcgccgccgggaa
ggccgtgagcaggggcgcaggcgcgtcccgatcatcaccgaggccgagttcctggcccgc
cgcgaggccgtcgagcgcgtgatggtcgtccgtcagcacggcgaccgtacgcagatcggc
gtcctggaggacggcgtgctcgtcgagcactacgtcaacaaggagcagtcgacctcgtac
gtcggcaacgtctacctgggcaaggtccagaacgtgctgccctcgatggaggccgccttc
atcgacatcggcaagggccgcaacgcggtgctgtacgccggcgaggtgaacttcgaggcg
ctcggcatggccaacgggccgcgccgcatcgagtccgccctgaagtccggccagtccgtc
ctcgtgcaggtcacgaaggacccgatcgggcacaagggcgcgcgtctgaccagccaggtc
tccctgccgggccgctacctcgtgtacgtccccgaggggtcgatgaccggcatcagccgc
aagcttcccgacaccgagcgggcccggctgaagaccatcctcaagaagatcgtccccgag
gacgcgggcgtcatcgtgcgcaccgccgccgagggcgcgagcgaggacgagctgcgccgg
gacgtcgagcggctgcaggcgcagtgggaggagatccagaagaaggccaagaacggcggc
aacgccccgacgctgctgtacggcgagccggacatgaccgtccgggtcgtgcgcgacatc
ttcaacgaggacttctccaaggtcatcgtcagtggtgacgaggcctggcagacgatccac
gggtacgtcgcgcacgtcgcccccgacctggccggccggctgtcgaggtggaccagcgag
gtcgacgtcttcgccacctaccggatcgacgagcagctcgccaaggcgctggaccgcaag
gtctggctgcccagcggcggttcgctggtgatcgaccggaccgaggcgatggtcgtcatc
gacgtcaacaccggcaagttcaccggccagggcggcaacctggaggagacggtcaccagg
aacaacctggaggcggccgaggagatcgtgcgccagctgcggctgcgcgacctcggcggc
atcatcgtgatcgacttcatcgacatggtcctggagtccaaccgcgacctggtgctgcgc
cgcctgctggagtgcctgggccgcgaccgtacgaagcaccaggtggccgaggtgacctcg
ctgggcctggtgcagatgacccgcaagcgggtcggccagggcctgctggagtccttctcc
gagacctgcgtccactgcaacggccgcggtgtcatcgtccacctcgaccaggccaccgcc
aacggtggcggcggcaagcgcaagaagcgcggccggggtgccgaggcgccggagcccgcg
cacgagcacgtgcacgagaccgccgccgtggccgtggagaccggtgaggccgtcgagccc
gaggtggagaccgccgcggaggtggccgccgaggccggcacgccggtggccctgcccgcg
ccggagttcgcgccggacgaggagctgtacagcagcgtcgccgaggcggaggcggcggcc
acccgtggccgtacgcggcgccgggcgagccgccgggcgtcggctccggcgggcgcgccg
aaggcggagaaggccgagcgggctccccgggccgagcgggcttccagggcccagcgggcc
gcggaggccgagcaggccgccgagaccgaggttccggccgaggtcccgaccgcccaggac
gtcaccgccgagcaggccgccgcgcgtccggtgcagccggagccggccgccgaggcgctg
gccgagcccgtcgccgccgaggaccaggtggtcccggcgccgcaggccgaggcccctgcc
gaggaggccgcccccaagggccgtacgcgccgtcgggcgacccggagggcgtcggccccg
gccggtgctcccgcgggcgccgaggcggccgtggtgacggtgccggagaccgcgccggcc
gccgaggctcccgccgctgaggcccccgcggccgaggcgccggcggagcaggccgcgccg
gtcgccgaggccccggccgggaagccggcggaggccgaggccgccgccgctccggcccgc
ccgcgccgtcgtgcggtgcgcaaggccaccgcgccgaccgcgtccgaggaggcggccgtc
gtggtcgtcccgtcggccccggcgacggaggagactcccgccgccgaggctcccgtggcg
gaggctccggccgccgaggcaccggtcgccgaggccccggcgggcgaggtgacggccgag
gaggtggccgaggcgacggctcccgccaagaaggcggcccgcaagaccgccgccaagaag
acggcggcgaagaagaccgccgccaagaagacgacggccaagaagacggccgccaagaag
acgacggccaagaaggcggccaagaccgccaagacggccgccgcgaagtcgacggcgaag
aagaccaccacggtctccaccgccggcgacgagggctga
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