Symbiobacterium thermophilum: STH1327
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Entry
STH1327 CDS
T00196
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sth
Symbiobacterium thermophilum
Brite
KEGG Orthology (KO) [BR:
sth00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sth03016
]
STH1327
Enzymes [BR:
sth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
STH1327
Transfer RNA biogenesis [BR:
sth03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
STH1327
Prokaryotic type
tRNA splicing ligases
STH1327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAD40312
UniProt:
Q67PT1
LinkDB
All DBs
Position
1470606..1471943
Genome browser
AA seq
445 aa
AA seq
DB search
MCAGRGASREEVRRGAANQGTRESGGCVAMPFTLWERYPVFGEHDRDTLAQLGRCAEAGR
AVGAALMADGHKGYSQPIGGVLFYERFVSPSGVGYDIACGNKAVRTDLVYGEIRREKDRI
AAEIHRRVAFGLGRKNPDPVDHELFDDPTWRDVRPLQSLKSMARDQLGTVGAGNHYVDIM
AEVPEGWQLGDPIADDAPVWVAVHFGSRGFGHRTASGFLNLAAGRPWDAGAPGESMDQPP
TLIPADSELGQAYIAAMKLAGRYAYAGRDYVVDQVLRILGARPTFTVHNHHNFAWFEEHG
GVKGWVIRKGATPLFPGQLGFIGGSMGDVAVVVQGVDHPESRAALYSTVHGAGRVMSRTQ
AAGRWKRHRGRRIRTGGAVDMDAVRRRLAQAGVALVGGDADEAPQVYRPLRQVLRWHAPT
LKVLHVLAPVCVVMAAADEFDPYKD
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
gtgtgcgcggggcggggggcgtccagagaggaagtccgccgaggggcagcgaaccaggga
accagggaatcgggagggtgtgttgcgatgccgtttacgctgtgggagcgatatcccgtc
ttcggggagcacgaccgggacaccctggcccagcttggccgctgcgcggaggcgggccgg
gccgtgggggccgccctgatggccgacggccacaagggctacagccagcccatcggcggt
gtgctcttctacgagcggttcgtctcgccctcgggcgtgggctacgacatcgcatgcggc
aacaaggcggtgcggaccgacctggtgtacggggagatccggcgggagaaggaccgcatc
gccgccgagatccaccgccgggtcgcgttcggcctgggccggaagaatcccgacccggtg
gaccacgagctgtttgacgaccccacctggcgggacgtgcgcccgctccagtcgctgaag
tccatggcccgggaccaactgggcaccgtaggggccggcaaccactacgtggacatcatg
gctgaggtgcccgagggctggcagctgggcgatcccattgccgacgacgcaccggtctgg
gtggcggtgcacttcggttcccggggctttggccaccgcacggccagcggcttcctgaac
ctggccgccggccgcccctgggacgccggggcccccggggagtcgatggaccagcctccg
accctcatcccggcggactcggaactgggacaggcctacatcgccgccatgaagctcgct
ggccggtacgcctatgccgggcgggactacgtggtcgaccaggtgctccggatcctgggc
gcgcggccgacctttacggtgcacaaccaccacaacttcgcctggttcgaggagcacggc
ggcgtgaagggctgggtgattcgcaagggggcgactccgcttttccccggtcagctgggc
ttcattggcgggtcgatgggcgacgtcgccgtggtggtgcagggcgtggaccacccggag
tcccgggcggccctgtacagcaccgtccacggcgccggccgggtgatgtcccgcacgcag
gccgcgggccggtggaagcggcaccggggaaggcggatccggacgggtggcgccgtggac
atggatgcggtgcggcggcggctcgcccaggcgggggtggccctcgtggggggcgacgcc
gacgaggcgcctcaggtgtatcggccgctccggcaggtgctgcgctggcacgcgccgacg
ctgaaggtcctccacgtgctggcgccggtctgtgtggtgatggctgcagcggacgagttc
gatccgtataaggattga
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