Symbiobacterium thermophilum: STH1342
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Entry
STH1342 CDS
T00196
Name
(GenBank) primosomal replication factor Y
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sth
Symbiobacterium thermophilum
Pathway
sth03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
STH1342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sth03400
]
STH1342
Enzymes [BR:
sth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STH1342
DNA repair and recombination proteins [BR:
sth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
STH1342
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PriA_C
DEAD
PriA_3primeBD
ResIII
Helicase_C
Zn_ribbon_PriA
AAA_19
AAA_16
Viral_helicase1
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
BAD40327
UniProt:
Q67PR6
LinkDB
All DBs
Position
1486946..1489171
Genome browser
AA seq
741 aa
AA seq
DB search
MAVDVTAEGTDKLFTYLVPRSLAGRLTPGQWVRVPFGGRRLVGLYVGPAERPPEGVALKE
IAGLLPDIPPIPAPLVQLARWTADRYLSTFPAALRLLLPTEARRQEVRTLTITNYRLNVD
DVEALVSELRRRAPRQAELLAYMARVGGEAERAQVLADLGESIAGPIRVALEKGWLTAGR
VARRRDPFADEHVEPAPPPVLTPEQEQALASIRQELIAPPAFRQPVLVHGVTGSGKTELY
LRAIALVREMGKNAICLVPEISLTPQMIQRFRARFGGDVAVLHSALSAGERFDEWQRIRR
GEVSIVVGARSAVFAPFENVGLIIIDEEHEQSYKQEAPPPAYHAREVAAERARLEGALLV
LGSATPALESFHLAQTGVYRLVSLGHRIDNRPLPPVTLVDMREELRAGNRSIFSRALVEA
LDQTLSAREQAILFLNRRGYNTFIMCRSCGEAIQCVHCAVALTYHLGDDHLACHYCGYTA
PVPLVCPSCGSDKIRHLGAGTERVEQELQRLYPHVRVARMDVDTTRRKGAHAAILKRFAD
HEVDVLVGTQMITKGLDFPGVTLVGVVLADTSLNLPDFRAAERTFQLVTQVAGRAGRGDR
PGRVIVQTYQPDHAALQAAAEHDYHRFFAEEIRFRQELDYPPFAHMIHLVISGEDEAAVA
ATAQNVHRVLAEGGFGGQILGPAPAPLAKLRGKYRYHLVLKGPDVRAMAAEVKACFAAAR
GKWRASRSVSLSVDVDPVSIL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
gtggcggtggacgtcaccgccgaagggaccgataagctgttcacctacctcgtgccccgc
agcctggccgggcggctcacgcccggccagtgggtgcgggttcccttcggcggccgcagg
ctggtggggctttacgtgggtcccgccgagcggccgccggagggggtggccctgaaggag
atcgcggggctccttcccgacatcccgccgatcccggcgccgctggtgcagctggcccgc
tggacggcggatcgctacctctccaccttcccggctgccctccggctgctgctgcccacc
gaggcccggcggcaggaggtccggacgctcaccatcaccaactaccggctgaacgtggac
gacgtggaggccctggtgtccgagctccggcgccgggccccgcgccaggcggagctcctg
gcctacatggcccgggtcggcggcgaggccgaacgggcgcaggtgctggccgacctgggc
gagtccattgccggaccgatccgggtggccctggaaaagggatggctcacggcgggccgg
gtggcccggcgccgggatcccttcgccgatgagcacgtggagccggcgccacccccggtg
ctcaccccggagcaggagcaggcgctggcgtccatccggcaggagctcatcgccccgccg
gccttccggcagccggtgctcgttcacggcgtgaccggctcgggcaagaccgagctctac
ctcagggcgatcgccctggtgcgggagatggggaagaacgcgatctgcctggtgccggag
atctccctcacgccgcagatgatccagcggttccgggcgcgcttcggcggcgacgtggcg
gtgctgcattcggcgctgtcggccggggagcggttcgacgagtggcagcgcatccgccgg
ggcgaggtctccatcgtcgttggagcgcgctcggcggtgttcgcgccgtttgagaacgtg
gggctcatcatcatcgacgaggagcacgagcagtcctacaagcaggaggcgccgccgccc
gcctaccacgcccgggaggtggcggcggagcgggcccggctggagggggcactgctcgtg
ctcggctccgcgacgccggccctggagtcgtttcacctggcgcagaccggcgtctaccgg
ctggtttcgttgggacaccggatcgacaaccggccgctgccgccggtgaccctggtggac
atgcgggaggagctgcgggcgggcaaccgctcgatcttctcccgggcgttggtcgaggcg
ctggaccagacgctgtcggcccgggagcaggcaattctctttctcaaccgcaggggttac
aatacatttatcatgtgccggtcgtgcggcgaggcgatccagtgcgtgcactgcgccgtc
gccctgacctatcacctgggcgacgaccacctggcctgccactactgcggctacacggcg
ccggtgcccttggtctgtccgagctgcgggtccgacaagatccggcacctgggggccggc
accgaacgggtggagcaggagcttcagcggctctatccgcacgtgcgggtggcccgcatg
gacgtggacaccacccggcgcaagggggcccacgccgcaatcctgaagcggttcgcggac
cacgaggtggacgtcctcgtcggcacgcagatgatcaccaaggggctggacttccccggc
gtgaccctggtgggcgtggtcctggccgacaccagcctgaacctgccggacttccgggca
gcggagcgcaccttccagctggtgacacaggtcgccggccgggcgggccggggtgaccgg
cccggccgggtgatcgtgcagacgtaccagcccgatcacgccgcgctgcaggctgcggcc
gagcacgactaccaccgcttcttcgccgaggagatccgcttccggcaggaactggattac
ccgccgttcgcccacatgatccatctggtgatctcgggcgaggatgaggccgccgtggcc
gccaccgcacagaacgtgcaccgggtgctggcggagggcggcttcggggggcagattctg
gggccggcgccggccccgctggccaagctccggggcaagtaccggtaccacctggtgctg
aagggcccggacgtccgggcgatggcggccgaggtcaaggcctgtttcgccgccgcccgg
gggaagtggcgtgcttcccggtcggtctcgctctcggtggacgtggatccggtgagcata
ctgtaa
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