Symbiobacterium thermophilum: STH1531
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Entry
STH1531 CDS
T00196
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sth
Symbiobacterium thermophilum
Pathway
sth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STH1531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sth03019
]
STH1531
03016 Transfer RNA biogenesis [BR:
sth03016
]
STH1531
Enzymes [BR:
sth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
STH1531
Messenger RNA biogenesis [BR:
sth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
STH1531
Transfer RNA biogenesis [BR:
sth03016
]
Prokaryotic type
tRNA degradation factors
STH1531
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
BAD40516
UniProt:
Q67P77
LinkDB
All DBs
Position
1668196..1670484
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AA seq
762 aa
AA seq
DB search
MPPGAPDGPGHRRRTNVTASFSMELGGRTMTLETGRLAKQASGSVLVNYGDSVVLCTAVG
SATPREGVDFFPLTVDYEERMYSVGRIPGNWFRREGRPTSKAILWARLTDRPIRPLFPEG
FRNDVQVVCTVLSVDPDHPVEIMGMIGASAALTISDIPFEGPIGGVIVGLVDGQFVINPT
AEQQERSEMHLVVAGTEHAVLMVEAGAKEVPEQTMLDAILFGHEVIKNTIIPTIKQMQAE
VGKPKREVVLFNPPPELEQAVREAATVRLREAVRNPDKLAREEAVAAVGEAVQAELAEQF
PESEKHIAYLLKKVLKEEVRRAIIEEGIRPDGRSLTEIRPIECAVDLLPRPHGSGLFQRG
QTQVLSICTLGTLGDMQKLDDLTLEETKRFMHHYNFPPYSVGETRPLRGPGRREIGHGAL
AERALEPVIPPEEEFPYTIRVVSEVLESNGSSSMASVCGSTLALMAAGVPIKAPVAGVAM
GLVEDPETGRYAVLTDIQGIEDALGDMDFKVAGTKKGVTALQMDMKISGTSREILEKALM
QAREGRMFIMEKMLACISEPRKELSPWAPRIITMKISPEKIRDVIGKGGSTINKIIEETK
VGHTKVEIDIQDDGTIYIAAVNLEAGERARQMIEALVKDPEPGMIYTGRVTRLMQFGAFV
EILPGKEGLVHISELSDKRVARVEDVVNIGDEVTVKVTEIDRLGRINLSIKDAMPKQAAS
QPSGRPEARQPQPKPGQGKPGPAKAGAGRPGPGKPGPGRHGR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
gtgccgcccggtgcaccagacggtcctgggcacagaaggaggaccaacgtgaccgcatcg
ttttcgatggagctcgggggccgcacgatgaccctcgagaccggccgcctggccaaacag
gccagcgggtcggtattggtgaactacggggacagcgtggtgctctgcaccgcagtaggc
agcgcaaccccaagggaaggtgtggacttctttccgctgaccgtagactacgaggagcgc
atgtactccgtgggccggattccgggcaactggttccggcgcgagggccggcccacgagc
aaggcgatcctctgggcccggctgacggaccggcccatccggccgctgttcccggagggc
ttccgcaacgacgtgcaggtggtctgcaccgtgctgtcggtggatccggaccatcccgtg
gagatcatgggcatgatcggcgcctcggcggcgctgaccatctccgacatccccttcgag
gggcccatcggcggcgtcatcgtggggctggtggacggccagttcgtcatcaaccccacg
gctgagcagcaggagcgcagcgagatgcatctggtcgtggccggcaccgagcacgcggtg
ctcatggtggaggcgggcgccaaggaggtgcccgagcagaccatgctggacgccatcctg
ttcggccacgaggtcatcaagaacaccatcatcccgacgatcaagcagatgcaggccgag
gtgggcaagcccaagcgggaggtggtgctcttcaacccgccccccgagctggagcaggcg
gtgcgggaggcggccaccgtccggctgcgggaggcggttcgcaatccggacaagctggcc
cgggaggaggccgtcgccgcggtgggcgaggccgttcaggccgagctggcggagcagttc
cccgaatcggagaagcacatcgcctacctgctgaagaaggtgctgaaggaggaggtgcgc
cgggcgatcatcgaggagggcatccggcccgacgggcgcagcctcaccgagatccggcct
atcgagtgcgccgtggacctcctgccccggcctcacggctccggcctcttccagcggggc
cagacccaggtgctctcgatctgcaccctgggcaccctgggcgacatgcagaagctggat
gacctcacgctggaagagaccaagcggttcatgcaccactacaacttcccgccctactcc
gtcggcgagacgcggccgctgcgcggccccggccgccgcgaaatcggccacggcgcgctg
gccgagcgggctctggagcccgtcattcctcccgaggaggagttcccgtacaccatccga
gtcgtgtcggaggtgctggagtccaacggctcgtcctcgatggcctcggtctgcggctcc
acgctggcgctgatggcggccggcgtgcccatcaaggcgccggtggccggcgtggccatg
ggtctggtggaggatcccgagaccggccgctacgccgtgctcaccgacatccagggcatc
gaggacgccctgggcgacatggacttcaaggtggccggcactaagaagggcgtcaccgcc
ctgcagatggacatgaagatctccggcaccagccgggagatcctggagaaggccttgatg
caggcgcgcgagggccgcatgttcatcatggagaagatgctggcctgcatctccgagccg
cgcaaggagctgtcgccttgggcgccgcgcatcatcacgatgaagatctcgccggagaag
atccgggacgtcatcggcaagggcggctccaccatcaacaagatcatcgaggagaccaag
gtgggccacaccaaggtggagatcgacatccaggacgacggcacgatctacatcgccgcc
gtgaacctggaggccggcgagcgggcccgccagatgatcgaggcgctggtgaaggatccc
gagcccggcatgatctacaccggccgggtcacgcggctcatgcagttcggcgcgttcgtc
gagatcctccccggcaaggaagggcttgtgcacatcagcgagctgtcggacaagcgggta
gcccgggtcgaggacgtggtcaacatcggcgacgaggtgaccgtgaaggtcacggagatc
gaccggctcggccgcatcaacctctccatcaaggacgccatgccgaagcaggcggcctcc
cagccgtcagggcggccggaggcccgccagccccagccgaagcccggccagggcaagccc
ggtccggccaaggccggggccggcaggccgggtcccggcaagccgggtccgggccgacac
ggtcgatag
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