Symbiobacterium thermophilum: STH1797
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Entry
STH1797 CDS
T00196
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sth
Symbiobacterium thermophilum
Pathway
sth03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
STH1797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sth03400
]
STH1797
Enzymes [BR:
sth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
STH1797
DNA repair and recombination proteins [BR:
sth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
STH1797
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
BAD40782
UniProt:
Q67NG1
LinkDB
All DBs
Position
complement(1940227..1941165)
Genome browser
AA seq
312 aa
AA seq
DB search
MRLPFPPMLLERAEAPFADDDWVYQVKWDGVRNLTLVEGGRVRHWSRRLRERTALFPEFD
GLAAALPGRRAVLDGEIIVLQDGRPSFSAVLERDLAGSTAGAARRRPATLMLFDLLEWDG
RELYDVPLAERLALLEAVVPPDEAWQVVSSFPGSDGPALYAAAVARGLEGVVAKRRASRY
VPGARSRDWLKVKRRSEMLAVVVGYTNPTGRPGGLLLGAYRDGRLRYIGRVGSGLSGADL
AAIRHHLPSGPCPLAEIPRLRERFGGDPGPVVWVEPLLTVRVSFTEWTEEGRLRDPVVVG
FSAEPPEAAVIP
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
gtgcggctgcccttcccgcccatgctgctggagcgcgccgaggccccctttgcggacgac
gactgggtctatcaggtgaagtgggacggcgtgcggaacctgacgctggtggagggcggt
cgggtgcgccactggagccgtcggctgcgggagcgcacggcgctgttccccgagttcgac
ggcctggccgcggccctccccgggcggcgggccgtgctggatggcgagatcatcgtgctg
caggacggtcggccgagcttctcggccgtgctggagcgggacctggcgggcagcacggcg
ggggcggcccgaaggcggccggccaccttgatgctcttcgatctgctggagtgggacggc
cgggagttgtacgacgtgcccctggccgagcggctggcgctgctggaggcggtggttccg
cccgacgaggcgtggcaggtggtctcgtccttcccgggcagcgatgggccggcgctctac
gcggccgccgtggccagggggctggagggggtcgtggccaagcggcgtgccagccggtac
gtgccgggggcgcgcagccgcgactggctgaaggtcaagcgccggtcggagatgctggcc
gtggtggtgggctacaccaacccgaccggccgcccgggcgggctgctgctgggcgcctac
cgggacgggcggctccgctacatcggccgggtaggctcggggctgagcggcgcggacctg
gccgcgatccggcaccacctgccgtccggcccgtgccccctcgcggagattccgaggctc
cgggagcggttcggcggcgaccccggaccggtggtgtgggtggagcccctcctcacggtg
cgggtgagcttcaccgagtggaccgaggaggggcggctgcgggacccggtggtggtcggg
ttttcggccgagccgccggaggcggcggtgatcccgtaa
DBGET
integrated database retrieval system
