KEGG   Symbiobacterium thermophilum: STH3084
Entry
STH3084           CDS       T00196                                 
Symbol
rpoC
Name
(GenBank) RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sth  Symbiobacterium thermophilum
Pathway
sth03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sth00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    STH3084 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sth03021]
    STH3084 (rpoC)
   03400 DNA repair and recombination proteins [BR:sth03400]
    STH3084 (rpoC)
Enzymes [BR:sth01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     STH3084 (rpoC)
Transcription machinery [BR:sth03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     STH3084 (rpoC)
DNA repair and recombination proteins [BR:sth03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      STH3084 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid Peptidase_M23
Other DBs
NCBI-ProteinID: BAD42066
UniProt: Q67JT4
LinkDB
Position
complement(3281542..3285081)
AA seq 1179 aa
MLDVNFFDSIQIGLASPERIRQWSRGEVKKPETINYRTLRPERDGLFCERIFGPTRDWEC
HCGKYKRVRYKGIVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDI
SPRALEKVLYFAAYIVTDPGDTPLMEKQLLTENEYREYREKYGDAFKAGMGAEAVKVLLE
KLDLDKMAEELRHEVRTVSGQRKIRATRRLEVVEAFRKSGNRPEWMILEVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKLHQCGLPKE
MALELFKPFVMKKLVNDGHAHNIKSAKRMVERMRPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAHNIL
NPKDGQPVITPSKDMLLGSYYLTLPKPDSEPKMRFSHPHEALLAYQNGLVELHDWVEIRF
PEPPKDLEPYSEEWWEHPDNWNTVSGKRIKTTIGRMIFNEVLHPKLRYINETIEKKWMGK
IIDMAYRKLGTVKTAEQTDKIKDLGFRFATQSGATIAISDIKVPGDKDEILRQAEKEVDQ
VERNYRRGLITNDERYQRVIAIWSEAKEKVTSTLVKTMEDFNPVNMMMKSGARGNISQIT
QLAGMRGLMADPSGKIVELPVKANFREGLTVLEYFLSTHGTRKGLADTSLRTADSGYLTR
RLVDVAQDVIVREDDCGTTAGITWTEEVDQFGNVIEPITPHIVGRVALNDIVHPETGEII
VYANEMIDEDLAEQILAAGIKEVTIRSVLTCRTRYGVCRACYGRNLATGRLVDVGEAVGI
IAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGQAIIAELDGEVSIT
EQKGRREITITSEDGESVTYSIPYGARVKVRSGQFVEAGDELTEGSVNPHDLLRVKGLRG
VQRYLLREVQKVYNLQGVDINDKHIEIMVRQMLRKVKVEDPGDTDLLPGGFVDIFDFEDE
NERVIMEGGVPAVARPMLLGITKASLATDSFLSAASFQETTRVLTDAAIKGKRDPLLGLK
ENVIIGKLIPAGTGMGRYRNIKLFTEDDVYAEHLQGADD
NT seq 3540 nt   +upstreamnt  +downstreamnt
atgctcgatgtcaatttctttgactccatccaaatcggcctggcctctcccgaacgcatc
cggcagtggtcccgcggcgaggtaaagaagccggagaccatcaactatcggacgctgcgc
cccgagcgcgacggcctgttctgcgagcggatcttcgggccgacccgcgactgggagtgc
cactgcggcaagtacaagcgggtccggtacaagggtatcgtctgcgaccgctgcggcgtc
gaggtgacccgggcgaaggtgcggcgtgagcgcatgggccacatcgagctggcggcgcct
gtgagccacatctggtacttcaagggcatcccgtcccgcatggggttgatcctcgacatc
agcccgcgggctctggagaaggtcctctacttcgcggcgtacatcgtgaccgaccccggc
gacacgccgctcatggagaagcagctgctgaccgagaacgagtaccgggagtaccgggag
aagtacggggacgccttcaaggcgggcatgggcgccgaggccgtcaaggtcctgctggag
aagctggacctggacaagatggcggaggagctgcgccatgaggtccgcacggtgtcgggc
cagcggaagatccgcgcgacccggcgcctggaggtggtcgaggccttccgcaagtcgggc
aaccggcccgagtggatgatcctcgaggtcatccccgtcatcccgccggacctgcggccc
atggtgcagctggacggcggccggttcgccacgagcgacctcaacgacctctaccgccgg
gtgatcaaccggaacaaccggctgaagcggctgctcgacctgggcgcgccggacatcatc
gtccgcaacgagaagcgcatgctgcaggaggccgtggacgccctcatcgacaatggccgc
cggggccgcccggtgacgggccccggcaaccggccgctgaagtcgctctccgacatgctg
aagggcaagcaggggcgcttccgccagaacctgctgggcaagcgcgtcgactactccggc
cgctcggtcatcgtggtcggcccgcacctgaagctgcaccagtgcggcctgcccaaggag
atggcgctggagctgttcaagcccttcgtcatgaagaaactggtcaacgacggccacgcg
cacaacatcaagagcgccaagcgcatggtggagcgcatgcggcccgaggtgtgggacgtc
ctggaggaggtcatccgggagcacccggtgctgctcaaccgtgcgccgaccctgcaccgg
ctgggcatccaggccttcgagccggtcctggtcgagggccgcgccatccagatccacccg
ctggtctgcacggcgtacaacgccgacttcgacggcgaccagatggcggtccacgtgccg
ctgtcggccgaggcgcaggccgaggcccgcatcctcatgctggcggcgcacaacatcctg
aaccccaaggacggccagccggtcatcacgccgtccaaggacatgctgctgggctcctac
tacctcaccctccccaagcccgacagcgaacccaagatgcggttctcccatccccacgag
gccttgctggcctaccagaacgggctggtcgagctgcatgactgggtggaaatccgcttc
cccgagccgccgaaggacctggagccctactcggaggagtggtgggagcacccggacaac
tggaacacggtctccggcaagcggatcaagacgaccatcggccggatgatcttcaacgag
gtcctgcaccccaagctccgctacatcaacgagaccatcgagaagaagtggatgggcaag
atcatcgacatggcctatcgcaagctcggcacggtcaagaccgcggagcagaccgacaag
atcaaggacctcggcttccggttcgcgacccagtccggcgccaccatcgccatctccgac
atcaaggtgcccggggacaaggacgagattctgcggcaggcggagaaggaggtcgaccag
gtcgagcgcaactaccggcgcggcctgatcaccaacgacgagcggtaccagcgggtgatc
gccatctggtctgaggccaaggagaaggtcaccagcaccctggtcaagaccatggaggac
ttcaacccggtcaacatgatgatgaagtccggcgcccgcggtaacatctcgcagatcacg
cagctcgccggcatgcgcggcctgatggccgacccgtcgggcaagatcgtggagctgccg
gtgaaggccaacttccgcgagggcctgaccgtgctggagtacttcctgtccacccacggc
acccgcaagggcctggccgacacgtcgctgcgcaccgcggactcggggtatctcacccgc
cgcctggtggacgtcgcgcaggacgtgatcgtccgggaggacgactgcggcaccaccgcc
ggcatcacgtggacggaggaggtcgatcagttcggcaacgtgatcgagccgatcacgccg
cacatcgtgggccgcgtggcgctcaacgacatcgtccacccggagaccggcgagatcatc
gtctacgccaacgagatgatcgacgaggacctggccgagcagatcctcgcggccggcatc
aaggaggtcacgatccggtcggtgctcacctgccgcacccggtacggcgtctgccgggcc
tgctacggccggaacctggccaccgggcggctggtggacgtcggcgaggcggtgggcatc
atcgccgcccagtccattggcgagccgggcacgcagctgacgatgcgcacgttccacacc
ggcggtgtggcgggcgacgacatcacgcagggtctcccgcgcgtggaggagctgtttgag
gcccgtaagccgaagggccaggcgatcatcgccgagctggacggcgaggtctccatcacc
gagcagaagggccggcgcgagatcaccatcacctcggaggacggcgagtcggtcacctac
tccatcccgtacggcgcccgcgtcaaggtgcgctcgggccagttcgtggaggccggcgac
gagctgaccgagggctcggtgaacccgcacgacctgctgcgggtgaaggggctgcgcggc
gtgcagcgctacctgctgcgcgaggtccagaaggtctacaacctgcagggcgtggacatc
aacgacaagcacatcgagatcatggtccggcagatgctccgcaaggtgaaggtggaggat
cccggcgacaccgacctgctgccgggcggcttcgtcgacatcttcgacttcgaggacgag
aacgagcgggtgatcatggagggcggcgtgcccgccgtggcccggccgatgctcctgggc
atcaccaaggcgtcgctggcgaccgattcgttcctgtccgccgcctccttccaggagacg
acccgggtgctcaccgacgccgcgatcaagggcaagcgggacccgctgctcggcctgaag
gagaacgtgatcatcggcaagctgatcccggccggcaccggcatgggacggtaccgcaac
atcaagctgttcaccgaggacgacgtgtacgccgagcatctgcagggcgcggacgactag

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