Sphingobacterium thalpophilum: NCTC11429_00535
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Entry
NCTC11429_00535 CDS
T06778
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase pcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
stha
Sphingobacterium thalpophilum
Pathway
stha03420
Nucleotide excision repair
stha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC11429_00535 (pcrA)
03430 Mismatch repair
NCTC11429_00535 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stha03400
]
NCTC11429_00535 (pcrA)
Enzymes [BR:
stha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11429_00535 (pcrA)
DNA repair and recombination proteins [BR:
stha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC11429_00535 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
NCTC11429_00535 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_12
ResIII
AAA_11
YecM
AAA_22
DEAD
Motif
Other DBs
NCBI-ProteinID:
VTR29920
UniProt:
A0A4U9UA03
LinkDB
All DBs
Position
1:complement(582861..585140)
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AA seq
759 aa
AA seq
DB search
MDYLAGLNPSQRGAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIQKGVDPFNILVLTFTN
KAAKEMRERIMSVVGREAKNIWMGTFHSVFAKILRVEAELIGYPRNFTIYDTDDTKSLLR
SILKEMNLDDKLYNVNHVYGRISQAKNNLISPQEYNKNEAILAEDISNGRGQMGQIYMTY
AQRCYRAGAMDFDDLLFKTNVLLNKHPEVLHKYQHQFRYLMVDEYQDTNFSQYLIVKRLA
AVNENICVVGDDAQSIYAFRGANIQNILNFQKDYPDVKIFKLEQNYRSTKMIVNAANSVI
ANNKNQLEKNVFSDNEDGEKIKVSRAFSDNEEGKIVADQIIEEKALKGLNYKDFAILYRT
NAQSRAMEEALRKINIPYKIYGGTSFYQRKEIKDLIAYFRLTFNPNDEEALKRVINYPRR
GIGDSTIEKIMIAADQNQYRIWDVVANAAHFLDGRSASSVGGFAQMIQSFQALAKNNNAF
DTAMHIAQHCGILKELYEDKSVEGLARYENIQELLNGIKEFSEREDIEDRGLDVYMQDIA
LLTNDDNDKDPNADTVSLMTIHSSKGLEFPVVFIVGLEENLFPSQLSLNSRSELEEERRL
FYVAVTRAEKKLLLSYATSRYRWGTLNNCEPSRFLDELNPACLALDFRPRQTSASAGSFQ
GERIAWQQKDSDDMFSKPKPKPMVKTTSILPKAHKPTAGFAPSDTSNLQVGMEVEHERFG
FGKVVNLEGNKGDIKATIFFKELGQKQLLLKFAKLRIIQ
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
ttggattatttagcgggtttaaacccttcacaacgaggagccgtagagcaaacagaaggt
cctgtcatgattgtcgcaggagccggttcaggaaaaacacgggtgattacatatcgagta
gcgcacctgattcaaaaaggtgttgacccattcaatatcttggtgctgacatttaccaat
aaggcggccaaagaaatgcgtgagcgtatcatgtccgtcgtcggtagggaagcaaaaaat
atctggatggggacctttcactctgtatttgcaaagatactacgtgtagaagccgagttg
ataggctatccaagaaattttaccatctatgataccgatgataccaaaagtttgttgcgt
tcgatcttgaaagaaatgaacctggacgataagctctacaatgtcaatcatgtctatgga
cgtatatcgcaggccaaaaataacctcatatcaccgcaagaatacaataaaaatgaggcg
atcctcgccgaagatatctccaacggacgcgggcagatggggcagatctatatgacctat
gcgcagcgctgttatcgcgctggcgccatggactttgacgacctgctgttcaaaacaaac
gtcctgctcaacaaacatcccgaggtattgcataaataccagcaccaatttcgttacctg
atggtggacgagtatcaggataccaacttctcccagtatctgattgtaaaaaggctggcc
gcagtcaacgaaaatatatgtgtcgtgggggatgacgcacagtcgatatatgctttccgc
ggtgcgaatattcaaaatatcctgaatttccagaaggattatcccgacgtgaagatattc
aaattggaacagaattaccggtccaccaaaatgatcgtcaatgcggcaaattcggtaatt
gcgaataacaaaaaccagctggaaaagaatgtcttttcggataatgaggacggggaaaag
atcaaggtatcgcgtgcattttcggataatgaggagggtaagattgtcgctgaccagatt
atcgaagaaaaggccttaaagggcctcaactataaagattttgctattctctatcgtacc
aatgcccagtccagagcgatggaggaggctttgcgcaagattaatataccttataaaatc
tacgggggcacctctttttaccaacggaaagaaatcaaagatctgatcgcttattttcgg
ctgacctttaatcccaacgacgaagaggcactgaagcgggtcatcaattatccgcgccgt
ggtataggtgattcaacgatcgaaaagatcatgattgccgcagatcaaaatcaataccgt
atatgggacgtggttgccaatgcagctcattttctggacggaaggagtgcaagctctgtc
ggcggattcgcacagatgatacagagctttcaggcattagccaaaaataataatgctttc
gatactgcgatgcacattgcacagcactgtggtatactcaaagagctgtacgaagacaaa
tccgtcgaaggtctggcacgttatgaaaacattcaggaactgctcaatggcattaaggag
ttctcagaacgggaagatatcgaagacagaggcctggatgtctatatgcaggatattgcg
ctattgaccaacgatgacaatgacaaagaccccaatgctgatacggtatccctgatgacc
atacactcttccaaaggtctggaattcccggtagtgtttatcgtagggctcgaagaaaac
ctgttcccatcgcagctgtcgctcaactcccggtcagaattggaagaagaacgtagactt
ttttacgtggctgttaccagagctgaaaaaaaattgctactttcgtatgctacttcgcga
taccgctgggggacactcaataattgtgaacccagccgttttttggatgaactgaatccc
gcctgtcttgcgttggatttcagacctagacaaacttctgcttctgccggaagttttcag
ggcgaacgcatcgcctggcagcaaaaagacagcgatgacatgttttcgaaacctaagccc
aagcccatggtaaagacgacatccatcctgcccaaggcccacaaacctacagcgggtttt
gctccttcggacacttcaaaccttcaggtcggcatggaagttgaacatgaacgatttgga
tttggaaaggtggtcaatctcgaaggaaacaaaggagatataaaagcaactattttcttt
aaagagttgggtcagaaacaattgttgcttaaatttgcaaaacttagaataattcaataa
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