Sphingobacterium thalpophilum: NCTC11429_00842
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Entry
NCTC11429_00842 CDS
T06778
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
stha
Sphingobacterium thalpophilum
Pathway
stha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11429_00842 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stha03019
]
NCTC11429_00842 (pnp)
03016 Transfer RNA biogenesis [BR:
stha03016
]
NCTC11429_00842 (pnp)
Enzymes [BR:
stha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NCTC11429_00842 (pnp)
Messenger RNA biogenesis [BR:
stha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC11429_00842 (pnp)
Transfer RNA biogenesis [BR:
stha03016
]
Prokaryotic type
tRNA degradation factors
NCTC11429_00842 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
VTR31529
UniProt:
A0A4U9UHI7
LinkDB
All DBs
Position
1:complement(913221..915407)
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AA seq
728 aa
AA seq
DB search
MNYNEIKTTIDMGNGTQIELSTGKLAKQADGAVVLKQGNTMLLATVVSAKEAKSGVDFLP
LSVDYQEKYAATGRIPGGFLRREARLSDYEVLISRLVDRALRPLFPENYHAETQVQISLI
SADKEIMPDALAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSELEKATLEFI
VAGSAQDIGMVEGEAKEISEAEMVEAIAFAHQAIKKQIAAQVELANLVGKTVKREYNHEP
ENLELREAIYAATYDKVYAVAKSASAKHERSESFAKIAEEYRATMPEELDEDTEFLFKKY
FHDVQYDAVRNLVLNEGIRLDGRDVRTVRPIWSEVDYLPAAHGSALFTRGETQSLTSVTL
GAKDDEQMIDGAFINGYNRFILHYNFPAFSTGEVRPNRGPGRREVGHGNLAMRSLKQVLP
SDSENPYTIRVVSDILESNGSSSMATVCAGTLALLDAGVKLKAPVSGIAMGLISDEKTGK
YAILSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTQALDQAKEARLHIL
GEMKKTIAAPREDYKPHAPRIVQLLIDKEFIGAVIGPGGKIIQEMQRETGATISIEEVDN
KGVVQVFADNKASIDDAVGRIKAIASKPEVGETYEGKVKSIMPFGAFVEIMPGKDGLLHI
SEIDWKRFETMDGIFKEGDKVTVKLLDIDKQGKMKLSRKALLPRPPKEEKPKQDKTPGEA
PIAGAGQE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgaattacaacgaaattaaaacgaccatcgatatgggtaatggcacccagatcgaattg
tctacaggcaagttggctaaacaggctgatggcgccgtagtattaaaacagggcaatacg
atgttgctggcgacagtcgtttcagccaaagaagcaaaatctggcgtggactttttgcca
ctttcagtagactatcaagaaaaatatgcggcgacaggccgaatcccgggtggtttctta
cgtcgcgaagcgagattatccgactatgaggtattgatctcccgtttagtagaccgcgca
ttgcgtccattgttccccgagaattaccacgccgaaactcaagttcagatcagtttgatc
tcggcagacaaagagatcatgccggatgcattggccggacttgcagcctcagctgctatt
gcagtttccgatattccatttaatggccccatctcagaagttcgtgtcgctaagattgat
ggccagctggtgatcaatccgaaattgtccgagcttgaaaaggctactttagagtttatc
gttgctggatctgcgcaagatatcggtatggtagaaggtgaggcaaaagagatttcggaa
gctgaaatggtcgaagcaatcgcctttgcacaccaagcaatcaaaaagcagattgcagct
caggtggaactggccaacttggttggaaagaccgtgaagcgtgagtacaaccacgagcct
gaaaatctcgaattgagagaggcgatttacgctgctacctatgataaagtatatgcggtt
gccaaatcagcttcggcgaaacatgagcgttcggagagcttcgcaaaaattgcagaagaa
tatagagcgacgatgcctgaagagctggacgaggacaccgaatttctgttcaaaaaatat
ttccatgacgtacaatacgatgctgttcgtaacctggtgctgaatgaaggtatccgtttg
gatggccgcgatgtacgcacagtgcgtccgatctggtctgaggtggattatctgccagca
gcacatggttcggctctatttacccgtggtgaaacacaatcattgacatcggtcactttg
ggtgccaaggatgatgagcagatgattgatggcgcgtttatcaatggatataacagattt
attctgcactacaacttccccgcattttctacaggtgaagtgagaccgaatagaggtccc
ggccgtcgtgaagttggtcatggtaacctggccatgcgttcgttgaagcaggtattgcct
tctgattctgaaaatccttacacgatccgtgttgtttctgatatcttagaatccaatggt
tcatcgtcaatggcaacagtatgtgccggtaccttggcgcttttggatgccggtgtgaaa
ttaaaagctcctgtttcgggtatcgctatgggattgatctctgacgaaaaaaccggtaaa
tacgctattctatctgatatccttggcgatgaagaccatttgggagacatggactttaaa
gtaaccggtactgaaaaaggtatcgttgcctgccagatggacttgaaaatcaacggcctg
aaatgggaagtgttgacacaagctctagatcaggcaaaagaagcccgtctacatatcttg
ggtgaaatgaagaaaacgatagcggctcctcgtgaggattataaaccgcacgcgccacgt
atcgttcagttgctgattgataaagagtttatcggtgctgtgatcggtccgggtggtaag
atcattcaggaaatgcaacgcgagactggtgccacgatttcgatcgaagaagtggacaat
aaaggcgttgttcaggtgtttgcggacaataaagcctctattgacgatgcagtgggccgt
atcaaggcaatcgcttctaaacctgaggtaggtgagacttatgaaggtaaagtgaaatcg
atcatgcctttcggtgcttttgtggaaattatgccaggcaaagatggtttgttgcatatc
tctgaaattgactggaaacgttttgaaacgatggacggtattttcaaagaaggtgataaa
gtaactgttaaacttctggatattgacaaacagggtaaaatgaagctttcccggaaagca
ttgttgcctcgtcctccaaaagaagaaaaaccaaagcaggataaaactccaggcgaagct
ccaatagctggcgctggtcaagaataa
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