Sphingobacterium thalpophilum: NCTC11429_03481
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Entry
NCTC11429_03481 CDS
T06778
Symbol
rny
Name
(GenBank) Ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
stha
Sphingobacterium thalpophilum
Pathway
stha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11429_03481 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stha03019
]
NCTC11429_03481 (rny)
Messenger RNA biogenesis [BR:
stha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC11429_03481 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF4954
PFF1_TM
Motif
Other DBs
NCBI-ProteinID:
VTR47137
UniProt:
A0A4U9VLS3
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All DBs
Position
1:4055980..4057533
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AA seq
517 aa
AA seq
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MDVAIYIIISLIVGVAIGRYLLVLLFKKQEQEAKEKVNSILREAEQEGEHIKKKKLLEAK
EKFLQLKSEHEKEVNQRNNTINQKENTLRQKEQSINQKLENINRDKQELEARKKQLDKLV
ELNEKKSEEVETLKLQQIKQLESIAGVTADEAKNQLVDSLREEARSQAMIQIKDIVDEAK
LTATKEAKKVVIQTIQRTATESAIENTVSIFNIENDEIKGRIIGREGRNIRALEAATGVE
IIVDDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEEVVAKTRTQIEDEIVEIG
ERTAIDLGIHGLHPELIRMVGRMRYRSSYGQNLLQHSREVANFAATMAAELGLNVKHAKR
AGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPDVCNAIGAHHDEIEMTALISPIVQAC
DAISGARPGARREVVESYIKRLKELEDLALSYPGVEKTFAIQAGRELRVIVESEKVSDAQ
SEILAADISNRIQTEMTYPGQIKVTVIRETRSVSYAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgcaatttatatcataatttctctgattgttggtgtagctataggccgttat
cttctggtcctgttattcaaaaaacaagagcaggaagccaaagaaaaagtgaatagcata
ctgagagaagcagagcaggaaggagaacacattaaaaagaaaaaactcttagaagccaaa
gagaaattccttcaactaaaatccgaacatgaaaaggaagtgaatcaacgtaacaacacc
atcaatcagaaggaaaatacgttgagacagaaagaacaatcgatcaaccaaaagcttgag
aacatcaatcgcgataagcaggaactggaggcccgaaaaaaacagctggataagctggtg
gagcttaacgagaagaaatcggaggaggtcgaaacactaaaattgcagcagattaagcag
ctggagagcattgcaggtgtcaccgctgatgaagcgaaaaaccaactggtggattcgctg
cgtgaagaagcacgctctcaggcgatgatccagatcaaagacatcgtggatgaagcgaag
ctaacggccactaaagaagcgaaaaaggtggtaattcagacgattcagcgcacagcgacc
gaatctgctatcgaaaatactgtttctatttttaatatcgaaaatgatgagatcaagggg
cgtattattggtcgcgaaggtcgtaatatccgcgctcttgaagctgctacaggtgttgag
atcatcgttgatgatactcctgaagccattatcctatcgggttttgatcctgtacgtcgc
gaaattgcccgtttggcgttgcaccgcctggtgaccgatggccgtattcacccagcccgt
atcgaggaggtggtggccaaaacacgcacacagatcgaagatgaaattgtcgaaattggt
gagcgtacggctattgatttgggtatacacggcttgcatcccgaattaatccgtatggta
ggacgtatgcgttaccgctcgtcttacggtcagaacctgttgcagcactctcgagaggta
gctaattttgcagcaaccatggctgctgaacttggattaaatgtaaagcatgccaaacgc
gccggcttgctgcacgatattggtaaagtgcctgatgataatcccgagttgccacatgcc
atcctcggaatgcagctagcagaaaaatacaaagaacatcctgatgtctgcaatgccatc
ggggcacaccatgacgaaattgagatgacagcccttatatcgccaattgtgcaggcctgt
gatgcgatttcgggagcccgtccgggagcccgtcgtgaggtggttgaaagttacatcaaa
cgtttgaaagagctcgaagaccttgctttgtcttaccccggtgtcgaaaaaacattcgcc
attcaggcaggtcgcgaactgcgggtaattgttgagagcgagaaggtgtctgatgcgcag
tctgaaatattggccgcagatatttctaaccgtatacagacagaaatgacttatccggga
caaatcaaggttaccgttatccgcgagaccagatcggtatcctacgcgaagtaa
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