Sphingobacterium thalpophilum: NCTC11429_04153
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Entry
NCTC11429_04153 CDS
T06778
Name
(GenBank) Eukaryotic DNA topoisomerase I, catalytic core
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
stha
Sphingobacterium thalpophilum
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stha03032
]
NCTC11429_04153
03400 DNA repair and recombination proteins [BR:
stha03400
]
NCTC11429_04153
Enzymes [BR:
stha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NCTC11429_04153
DNA replication proteins [BR:
stha03032
]
Prokaryotic type
DNA Topoisomerases
NCTC11429_04153
DNA repair and recombination proteins [BR:
stha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC11429_04153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
CarG-like
Motif
Other DBs
NCBI-ProteinID:
VTR50650
UniProt:
A0A4U9VT60
LinkDB
All DBs
Position
1:complement(4767955..4768920)
Genome browser
AA seq
321 aa
AA seq
DB search
MKTKHTEGYTRRKIRNKFKYYDPSGQVIEDAKILKRIGALVIPPNWKEVWISRSPRSNLQ
AYGYDQKGRKQYVYHPKFVNQQQSEKFKQILYVGQYLQELRKISSRQLKQETWNMEKLCA
VAFKIMDSTLIRIGNKRYTLAYKSYGLSTLEKRHVKISGNTITLAYKGKKGVFQEKTWRN
KQLACLLGQLMQIKGKTVFCLDKTNCEGRFCGRTFNSYLRTHCPGNISCKDIRIWGASRE
AFKLLCKAKQPDEPKARKRQLNSVIKAVAKELGNTKAVSEKYYVHPTIQRVYMESKFPVI
NKEIPLEKLEFKLFRFLLKYS
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgaagcataccgaaggttatacaagacgaaaaatcagaaataaattcaaatat
tacgatccatcgggtcaggtgatcgaggatgccaagattttaaaaaggattggtgccctt
gtcatcccgcccaactggaaggaggtctggatttctagaagcccgcgtagtaatttacag
gcttatggttacgaccaaaagggccgtaaacaatacgtttatcatccaaagtttgtcaac
caacagcaatccgaaaaatttaaacagattctatacgtgggtcagtatcttcaggaattg
cggaagatcagttcacgccagctcaaacaggagacctggaatatggaaaagctatgtgct
gtagccttcaaaataatggacagcaccctcatccgcataggcaacaaacgctatacgttg
gcttataaatcatatggcctgagcacattggaaaaaagacacgttaaaatcagcggtaac
accatcacgctcgcctataaaggaaagaaaggtgtctttcaggagaagacctggcgtaac
aaacaactcgcgtgtttattaggacaactgatgcaaattaaggggaaaacggtcttctgt
cttgacaaaacaaattgtgaaggccgcttttgcgggcgcaccttcaacagttacctgcgt
acacattgtcccggaaatatcagctgcaaggacatccgcatatggggggccagcagggaa
gcattcaaactactttgcaaagctaaacagcctgatgagcctaaggcacgcaaaagacaa
ttaaactctgtcataaaagccgtcgcgaaggaattgggcaacaccaaagctgtttctgaa
aaatactatgtccatccaacaatccaacgggtttacatggaaagtaaatttccagtaata
aacaaagagattcctttggaaaagcttgaatttaagctatttcgcttcctgctcaaatat
agttag
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