Sphingobacterium thalpophilum: NCTC11429_04181
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Entry
NCTC11429_04181 CDS
T06778
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stha
Sphingobacterium thalpophilum
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stha03016
]
NCTC11429_04181 (rtcB)
Enzymes [BR:
stha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NCTC11429_04181 (rtcB)
Transfer RNA biogenesis [BR:
stha03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NCTC11429_04181 (rtcB)
Prokaryotic type
tRNA splicing ligases
NCTC11429_04181 (rtcB)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
VTR50777
UniProt:
A0A4U9VW74
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All DBs
Position
1:4794592..4796013
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AA seq
473 aa
AA seq
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MENKRINGNDIVALGYKENHTVGIALKINSKRHGFTRTEMLAKFKAVLDNPSEYLEDAIF
QVLAAAILDEEAIDASLIPLNERPLAFTIYGESAIETGAKDQMHIAMKLPVTVAGALMPD
AHQGYGLPIGGVLATNNAVIPYGVGVDIGCRMALSIFDLPIGLLETHQAFLKDVIMKHTR
FGAGNGYLKHERVDHVVLEDPLFKENSLLASLKDKAWTQLGSSGGGNHFVEFGIVEFTER
DERLDIEKGQYLGLLTHSGSRGLGATVAAHYTKLAKSLCKLPYKAENLAYLDLNSAEGQE
YWLAMNLAGDYASACHEVIHEKIRLALGAGLLAKVENHHNFAWKEKWNGQEVIVHRKGAT
PAAKGVLGIIPGSMASPGFLVRGKGATASIASASHGAGRLMSRTQAVKTLSTDDLNRLLA
DEGVTLLGAGMDEAPMAYKNIHEVMAAQKDLVDVVAQFAPKMVRMADDGRRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaacgaattaatggtaatgatattgttgctttgggctacaaagaaaatcat
acagtaggtattgcgttaaaaatcaacagtaaacgtcatggtttcacccgtacagaaatg
ctcgcgaagtttaaggccgtacttgacaacccttcggaatatcttgaggatgctatcttt
caggtacttgctgcagccattttggatgaagaggctattgatgcttcgttgataccgctc
aatgaacgcccgctggccttcacaatatatggcgaatcagcgatagaaacgggtgccaaa
gatcagatgcatatcgccatgaagctacctgtcacagtggctggcgcattgatgcccgac
gcccaccaaggatacgggcttccgataggaggtgtgttggccacaaacaatgccgtcatc
ccttacggagttggcgtggatatcggctgccgtatggcactttcgatctttgatctccca
atagggttgttagagacgcatcaggcttttttaaaggacgtcattatgaagcatacacgg
tttggagcgggcaatggctatctgaaacacgagcgcgtggaccatgtcgttttggaggac
cccttatttaaggagaattctttgctggcgtccctgaaagataaggcgtggacacaattg
ggatcttcgggtggaggcaatcactttgtcgagttcggtatcgtcgagtttactgagcga
gatgaaaggctcgatattgaaaaggggcaatatttgggtttgcttacccattcgggatcg
cgtggattgggtgcgacagttgctgcacattatactaaattagcaaaaagcttgtgtaaa
ctaccctataaggcggaaaacctagcttatttggacttaaacagcgcggaggggcaggaa
tattggttggccatgaaccttgcaggtgattatgcgtcagcttgtcatgaggtcatccac
gaaaagatcaggctggcgttaggggcggggttacttgccaaagtagagaatcatcataat
tttgcttggaaagaaaaatggaacggacaggaggttatcgttcatcgtaaaggagctacc
ccggccgccaaaggtgtcctgggcattattcccggttccatggcttcgcctggttttttg
gtccgtggaaaaggcgcgaccgcgtcgattgcatctgcatcccatggcgcgggccgtttg
atgagccgtacacaggcggttaaaactctttctacagatgaccttaatagattgcttgct
gatgaaggagttacactacttggagctgggatggatgaggcgccaatggcatacaaaaat
atccatgaggtgatggctgctcagaaagacttggtggatgtagtcgcacagtttgctccc
aaaatggtacgaatggctgacgacggtcgccgggaagattga
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