Sphingobacterium thalpophilum: NCTC11429_04395
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Entry
NCTC11429_04395 CDS
T06778
Symbol
mutM_2
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
stha
Sphingobacterium thalpophilum
Pathway
stha03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NCTC11429_04395 (mutM_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stha03400
]
NCTC11429_04395 (mutM_2)
Enzymes [BR:
stha01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NCTC11429_04395 (mutM_2)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NCTC11429_04395 (mutM_2)
DNA repair and recombination proteins [BR:
stha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NCTC11429_04395 (mutM_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Ribosomal_S13
UAE_UbL
HI0933_like_1st
Motif
Other DBs
NCBI-ProteinID:
VTR51643
UniProt:
A0A4U9VY39
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All DBs
Position
1:complement(5017403..5018176)
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AA seq
257 aa
AA seq
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MPELPDLQVFSKNLNRMIKGKTLEKAIIHNKQKIKVKEAELQALEGKTLNKVFRRGKRLF
LDFGKDAILAIHLMLHGKLEYSDTPDPKYALVSLTFKGGKILSVTDFQQMANIELNPPSA
EAIDALSPQLTADKLEQLLKASRAKIKTVLMDQKLIGGIGNAYADEILHAAQLSPLSIAG
KIPKKKVQQLAKAIKDVLEDAERQIQKTHPDIISGEVRDFLKVHRKQAKHDASGQTIKQT
KVGGRITYYTADQEEFS
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactacccgacttacaggttttcagcaagaacctcaaccgtatgatcaaaggt
aaaacgcttgaaaaagcgatcattcacaacaagcagaagatcaaggtcaaagaagcggaa
ttgcaagccctggaaggaaaaacactgaacaaggtcttccgccggggcaaaaggctcttc
cttgattttggtaaagatgccatccttgccattcacctgatgctacacggcaagctggaa
tacagcgatacgcccgatccaaagtatgcccttgtgtccctgacttttaagggaggtaaa
atactttctgtcaccgactttcagcagatggccaatatagagctgaatccgccctctgcg
gaagccatcgacgcgctgtctccccagttgacggcggacaagcttgagcagcttttgaag
gccagcagggccaagatcaagaccgttctgatggatcaaaaactcatcggtggcatcggc
aatgcgtatgctgacgaaatcctccatgcggcgcagctctcaccgctctccattgccggc
aagatccccaaaaagaaggtgcagcaattggctaaggccatcaaggacgtgctggaagat
gccgaacggcagatccagaagacgcatccggatatcatcagcggcgaggtcagggacttt
ctgaaagtgcaccgcaagcaggcaaaacacgatgcctccgggcagaccataaaacagacc
aaagtcgggggccgtatcacctactataccgctgatcaagaggagttcagctaa
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