Sphingobacterium thalpophilum: NCTC11429_04724
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Entry
NCTC11429_04724 CDS
T06778
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
stha
Sphingobacterium thalpophilum
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stha03032
]
NCTC11429_04724 (topA)
03400 DNA repair and recombination proteins [BR:
stha03400
]
NCTC11429_04724 (topA)
Enzymes [BR:
stha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NCTC11429_04724 (topA)
DNA replication proteins [BR:
stha03032
]
Prokaryotic type
DNA Topoisomerases
NCTC11429_04724 (topA)
DNA repair and recombination proteins [BR:
stha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC11429_04724 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
DUF7646
Motif
Other DBs
NCBI-ProteinID:
VTR53022
UniProt:
A0A4U9W2Y5
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All DBs
Position
1:complement(5344002..5346401)
Genome browser
AA seq
799 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFLVKSSYGHIRDLVKTDDAINTAKNFEQKYEVPSDK
KAVVSELKKLAKAAETVWLASDEDREGEAISWHLFETLGLKEESTKRIVFHEITKPAILR
AIENPRKIDYNLVNAQQARRVLDRLVGFELSPVLWKKVKPSLSAGRVQSVAVRLIVDRER
EINKFEPEAAFKIVAFFHTGKIKDSFKAELPQRFATEAEATQFLEDCKAALFSVKNLETK
PSKRSPAAPFTTSTLQQEASRKLGFSVARTMQVAQRLYESGRITYMRTDSVNLSDTAIEA
AEKEIKSAYGNQYHKVRRYKTKTSGAQEAHEAIRPTYFSAHTIEGDSSEKRLYELIWKRA
IASQMSEAEFERTLAKISISTRAEDLNAAGEVMKFDGFLKVYMESVDDDQENAVDEDSDN
AILPPLVVGQQLTLKSMSATERFTRPPARYTEASLVKKLEELGIGRPSTYAPTISTIQNR
GYVVKEEREGKQREYRVLTLENAEVKAVTWTEITGAEKGKMFPTDIGVVVNDFLVEHFNG
IVDFHFTANVEKEFDDIAHGLTEWTKMLHDFYGPFHSEVEDTLENADRANNERELGIDPV
SGKPVSVRIGKFGPLVQIGSADDEEKPRFASLRKGQMIETITFEDAMELFKLPKKVGMFE
DKEMTVAVGRFGPYIRHNSAFYSLPKGVEPLDVTEEEAIQIIKDKRQKDIEKVIRVFDEN
PEAQIEQGRWGPFIRFGKQNLKIPKGTEVEKITYEDVLKWAEQDAPKGKATKTKAAEKKT
VAKKAATKKAPVKKTTKSK
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaatttattgatagttgagtctccggcgaaagcaaaaacgatagaaggatat
ttaggcaaggattttttggtgaaatcaagttacggtcacatacgtgacctggtgaaaacc
gatgatgcgattaatacagcaaagaacttcgagcagaagtatgaagttccgtcagacaaa
aaagctgtggtaagcgaattgaagaaattggcgaaggcagcggagaccgtttggcttgca
tccgatgaagaccgggagggagaggctatttcatggcatttatttgagaccttgggtctg
aaggaggagagcaccaagcgtattgtttttcatgagattacaaagcctgctatcctcagg
gcgattgagaatccacgtaaaatagattataatcttgtcaatgcgcaacaggcgcgtcgg
gtattggaccgtctggtgggatttgagctgtcgcctgttttatggaaaaaagtaaaacct
tccttgtctgccggccgcgtgcagtcagttgcggtgaggttgattgttgaccgcgagcgt
gaaatcaataaatttgagccggaagcggcttttaagattgttgcgttttttcataccgga
aaaattaaggacagtttcaaggcggagttgccgcaacgctttgccacggaagccgaagcg
acgcaatttctggaagattgtaaggctgctttattctctgttaaaaatctggagaccaag
ccgtcgaaacgttcgcctgcggcgccatttacgacctcgacattgcagcaggaagccagc
agaaaactaggcttttcagttgcccgcaccatgcaggtagcacagcgcttatatgaatcg
ggacgtattacctatatgcgtaccgactcggtcaatttgagtgatacagctattgaagct
gctgagaaagaaattaaatctgcttatggtaatcaatatcataaagtaagacgatataaa
acaaagacatcgggagcccaggaggcacacgaggccattcgcccgacttatttttctgcg
cacactattgaaggtgattcgtctgaaaagcgtctttatgaactgatctggaagcgggct
attgcttcgcagatgagtgaagcggaatttgaacgcacattggctaaaatttcgatttca
acgcgcgcggaggatttaaatgctgctggtgaggtaatgaaattcgacggtttcctaaaa
gtctatatggaatctgtggacgatgatcaggagaatgctgtggacgaagatagcgataat
gctatcctgccaccgctggttgtaggccagcagctgacattaaaaagtatgtcggccacg
gagcgatttacaagaccgccagcacgttatacagaagcctcgttagtgaaaaaactagag
gaactggggattggacggccttctacctacgcgcctacgatttcgacgattcaaaacaga
gggtatgtggttaaggaagagcgcgaagggaagcaacgcgagtaccgcgttctcacttta
gaaaatgcagaagtaaaagccgtaacctggacggaaataacgggtgccgaaaaaggcaaa
atgtttccaacggacattggtgttgttgtaaacgattttctggtagaacactttaacgga
attgttgatttccactttaccgccaacgtagagaaggagtttgacgacattgcacatggc
ctgaccgaatggacaaagatgctgcacgatttttatggtccgttccattctgaggtcgaa
gatacattggaaaatgccgaccgcgcaaataatgaacgtgagcttgggattgatccagtt
tctgggaaaccggtctcggttcgtattggtaaatttggaccattggtgcagatcggttcg
gcagacgacgaagaaaagccgcgctttgcttccttacggaagggacagatgattgagacg
attacctttgaagacgctatggaactgtttaagcttcccaagaaagtaggtatgttcgag
gataaggagatgacggtggcagttggacggtttggaccctatatccgccataattctgct
ttctactccttgccgaaaggggtagagcctttggacgtcacggaagaagaagccatacag
atcatcaaagacaagcgccagaaagacatcgagaaagtcatccgtgtgtttgatgaaaac
cccgaagcgcagattgagcaagggcgttggggaccatttatccgttttggtaagcagaat
ctgaaaatccctaagggtaccgaagtagaaaagatcacatacgaagatgtgctaaagtgg
gctgagcaggatgcgcctaagggtaaggcaactaagacaaaagccgcggagaaaaaaacg
gttgcgaaaaaagcggcgaccaaaaaagctccagttaaaaaaacaacaaagtctaaataa
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