Sphingobacterium thalpophilum: NCTC11429_04826
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Entry
NCTC11429_04826 CDS
T06778
Symbol
rhlE_4
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
stha
Sphingobacterium thalpophilum
Pathway
stha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11429_04826 (rhlE_4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stha03019
]
NCTC11429_04826 (rhlE_4)
Enzymes [BR:
stha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC11429_04826 (rhlE_4)
Messenger RNA biogenesis [BR:
stha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC11429_04826 (rhlE_4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
DEDD_Tnp_IS110
ERCC3_RAD25_C
Utp25_C
CheB_methylest
HEM4
Motif
Other DBs
NCBI-ProteinID:
VTR53438
UniProt:
A0A4V6KVK5
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All DBs
Position
1:5461254..5462381
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AA seq
375 aa
AA seq
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MEFKQLNLISPLLKAVAETGYTTPTAIQQKAIPVILDGKDLIGCAQTGTGKTAAFALPLL
QRLAEKKTGIGKQVPIRALILTPTRELAIQIGDNINLYRKYLSLQYCTIFGGVNQDKQVK
EIKRGVDILVATPGRLLDLMNQKLVFIDKIELLILDEADNMLDMGFIHDIKKILAKVPEK
RQTLFFSATMPPNIRKFAQGILHKPVEVDVTPVSSTAEKVNQCVYFIEKKEKIKLLTSLL
KQKKHERTIVFSRTKHGADKIVKLLAKNGLRAAAIHGNKSQNARQRALGEFKESRIKILI
ATDIAARGIDIEQLPLVINYDLPNVPETYVHRIGRTGRAGMEGQAISFCDVEERTYLSDI
EKLIGLKIKVDKIST
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaaacaacttaatctgatctccccacttttaaaggcagtcgccgaaacggga
tatactacgccgactgctattcagcaaaaggctattccggtcattttggacggaaaagat
ctcatcggatgcgcacagacgggcactggaaagacagcggcttttgcgttgcccttattg
caacgcctggccgaaaagaagacgggcattggtaaacaagtacctatcagagcgcttatc
ttaacgccgacacgtgaactggcaatacagattggcgacaatataaatctataccgtaaa
tacctgagtctccaatactgtaccatctttggcggtgtgaatcaggacaaacaggttaaa
gaaataaaaaggggggtcgacatccttgttgctactccaggccgtttattggacctcatg
aaccaaaaactggtttttattgataagattgagctgctgatccttgacgaggccgacaac
atgctggacatgggctttatccacgatatcaaaaagattctcgctaaagttcccgaaaaa
cgccagactttatttttctctgccacaatgcctccaaatattcgcaaatttgcacagggc
atactccataaaccggttgaagtagatgtgacaccagtcagctccaccgcagagaaggta
aatcaatgtgtctacttcatcgagaaaaaagagaaaatcaaattgctgaccagccttctt
aaacagaagaaacatgaacgcacaattgtattttcccgaaccaaacatggggctgataaa
atcgtcaagctcttggcaaaaaatggtcttcgagctgctgccattcacggaaataaatcg
caaaatgccagacaaagggcactgggcgaatttaaggaaagtcgtattaaaatactgatt
gccaccgatattgcggcacgtggcattgatatagaacagttaccgctagtcatcaactac
gacctccccaatgttcccgaaacctatgtgcaccgtattggccgcacgggcagagcgggt
atggaaggtcaggcgatttctttttgtgatgtggaagaaagaacttacctgagcgatatt
gagaaattaatcggactgaagataaaggtggacaagatctcaacatag
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