Sphingobacterium thalpophilum: NCTC11429_04905
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Entry
NCTC11429_04905 CDS
T06778
Symbol
rhlE_5
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
stha
Sphingobacterium thalpophilum
Pathway
stha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11429_04905 (rhlE_5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stha03019
]
NCTC11429_04905 (rhlE_5)
Enzymes [BR:
stha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC11429_04905 (rhlE_5)
Messenger RNA biogenesis [BR:
stha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC11429_04905 (rhlE_5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
VTR53760
UniProt:
A0A4U9W4U0
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All DBs
Position
1:complement(5553233..5554483)
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AA seq
416 aa
AA seq
DB search
MKFTEFGFVPTLEEGLESMMFEEATPIQEQTIPIIKGGADMIACAQTGTGKTAAYMLPIL
DAVAKDPKEAIRAIILVPTRELALQIDQQIMGMAYYTGATSIAIYGGGDGIGYEQQKRAI
REGVNIIVATPGRLISHLSSMKVDLTQLTHFVLDEADNMLDMGFQDDILRIVSYLPKKKQ
MLLFSATMPIKIRTFARKILNQPVEVNIAISKPSEGIDQQVYLVYDQQKMNLLKIILQNP
DYASVIIFASQKSTVKVLAQELQKLGIDAEGFHSDLDQSKREDIMSRFRSRQVRVLVGTD
VISRGIDIVGISLVVNYDVPPDPEDYVHRIGRTARAATTGTAITFVNEKDQYRFSQIENL
IGYPIEQVALPNGFESGPEYNPKKRVHKGNGTSKRRRFSNNKKKKNSNTEKQQKRA
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttactgaatttggttttgttcccacattggaagaggggttagaaagtatgatg
tttgaagaggctacgcctattcaagaacagactatacccattatcaaagggggggcagac
atgatcgcctgtgcccagaccggcacaggcaaaacagcagcttatatgctgccaatccta
gacgcggtcgcgaaagaccccaaagaggccatccgtgcgattattctggtgccgacccgt
gagctggctctacagatcgatcaacagatcatgggaatggcctattacaccggagccact
tctatcgccatctatggtggcggcgatggcataggctacgaacagcagaaacgtgcgatt
cgggaaggtgtcaatattatcgtagctacacccggtcggctgatcagccacctcagctcc
atgaaagtcgacttgacacagttaacgcattttgtgctcgatgaagcggacaacatgctg
gacatggggtttcaggatgacatactgcgtatcgtcagctatctgcccaagaagaagcag
atgcttctgttttcggcgacaatgccgatcaaaatccgcacctttgcgagaaagatctta
aatcagccggttgaagtcaatatagcgatttcgaagccatcggagggaatcgaccagcag
gtgtatttagtgtatgatcagcagaagatgaatctactgaaaatcattctgcagaatccc
gattatgcttccgtcattatctttgcttcacaaaaaagtaccgttaaagtgcttgcgcag
gaactacagaagctgggtattgatgccgaaggattccattctgacctcgaccagtccaag
cgtgaagatatcatgagcagatttaggtcgcgtcaggtacgtgtacttgtagggacagac
gtcatctcgcgtggcatcgatatcgttggaatcagcctggtggtaaattatgatgtgcca
ccagatccagaagactatgttcatcgcatcgggcgtaccgccagggcagcgacgacagga
acggcgattacctttgtcaatgaaaaggatcagtaccgtttttcgcagatcgaaaacctg
atcggctatcctattgagcaggttgcgctgcccaacggattcgagtccggcccggaatat
aatccgaaaaagagagtacataagggcaatggtacatcaaagcggcgacgttttagtaat
aacaagaagaagaaaaacagcaacactgaaaagcaacaaaaacgggcataa
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