Sphingobacterium thalpophilum: NCTC11429_04979
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Entry
NCTC11429_04979 CDS
T06778
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
stha
Sphingobacterium thalpophilum
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stha03016
]
NCTC11429_04979 (truB)
Enzymes [BR:
stha01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
NCTC11429_04979 (truB)
Transfer RNA biogenesis [BR:
stha03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
NCTC11429_04979 (truB)
Prokaryotic type
NCTC11429_04979 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
VTR54049
UniProt:
A0A4U9W5M7
LinkDB
All DBs
Position
1:5628774..5629496
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AA seq
240 aa
AA seq
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MENIEVSEGEARFNFAEGEMLLIDKPLTWTSFDVVGKIRNSLKPLKLKVGHAGTLDPLAS
GLLIVCTGKLTKKIDSYQAEDKEYTGTITLGATTPSYDLETAVDETFPIEHITEQLILDA
AKSFEGEIQQFPPAHSAIKINGERVYEKARRGEEVEIKSRLVRINSFIIEKIDLPVVHFR
ISCSKGTYIRSLAHDFGKVLHSGSHLSSLRRTKSGDYRVENAWNLEQLIAEIKRHKEIIK
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatatagaggttagtgaaggcgaagcaagattcaattttgctgaaggtgaaatg
ttgttgatcgataaacctttgacatggacgagtttcgatgttgttggaaaaatcagaaac
tcgcttaaacccttaaagctaaaagtggggcatgccggcactttggatcccctggcatcg
ggactgctcattgtatgtaccggcaaactgacgaagaagatcgacagctatcaggctgaa
gacaaggaatataccggcaccattaccttaggtgccaccacgccgtcctatgatctggag
actgcggtcgatgaaacctttcctatagagcatattacagaacagctgattctggatgcg
gcaaagtcctttgaaggtgagatccaacagttcccaccggcgcactcagccattaaaatc
aacggcgagcgcgtctatgaaaaagcacgccgcggtgaagaggtggaaatcaagtcgcga
ctggtacgtatcaacagctttatcattgaaaagatagaccttcctgtggtccatttccgc
atatcctgctccaagggaacatacatccgttccctggcccatgactttggaaaagtgctg
cacagtggatcacacttaagttccttaagacgcacaaaaagtggcgactaccgggtcgaa
aatgcctggaaccttgaacagctcatcgcggaaataaaacgtcataaagaaatcattaaa
taa
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