KEGG   Caldimonas thermodepolymerans: IS481_01195
Entry
IS481_01195       CDS       T06911                                 
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
  KO
K19641  two-component system, NtrC family, response regulator HupR/HoxA
Organism
sthm  Caldimonas thermodepolymerans
Pathway
sthm02020  Two-component system
Brite
KEGG Orthology (KO) [BR:sthm00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    IS481_01195
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:sthm02022]
    IS481_01195
Two-component system [BR:sthm02022]
 NtrC family
  HupT-HupR (hydrogenase synthesis regulation)
   IS481_01195
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 AAA_5 AAA_16 AAA AAA_3 AAA_2 Csa1 HTH_62 MCM nSTAND3 AAA_7
Other DBs
NCBI-ProteinID: QPC31835
LinkDB
Position
240728..242194
AA seq 488 aa
MHSVLVVDDERLSVEAIRRTLDDEFEVHVACSADEAMQVLHDRQAATGSDVPVDVILCDQ
RMPGTTGIQFLKQVRQLWPEIARIVISGHTDAEDIIAGINEAGIYQYVLKPWLPDQLREV
VASAAEARRLQHDVRRIELEMRAGTGVLRQRVRARQEQVVLHHEFSRLVRAPGSPLDEVC
RMAQKVARHDLPVLIQGESGTGKELLARAIHYSSPRASAAFVQENCAAVPDTLLESELFG
HKRGAFTGAYQDHVGLFQRANGGTIFLDEIGDTSPTFQVKLLRVLQEGEVRPVGATQAVA
VDVRVIAATHRDLEAEVRAGRFREDLYYRLAGVSLALPPLRERPMDLKLLAETLLRQASE
DLSKPCEGFTDEALACLVDYPWPGNIRELRNEIYRALALSDEPVIGASVLSPRVLRGRSG
AELNGHGTQPVRLPETGSLQERLDALEAAILKETLLRLRWNKTHAARELGLSRVGLRQKL
VRLGLEEK
NT seq 1467 nt   +upstreamnt  +downstreamnt
atgcacagcgtcctcgttgtagacgacgaacgcctgtccgtcgaggccatccgccgcacc
ctcgacgacgagttcgaagtgcatgtcgcctgctccgccgacgaggcgatgcaggtgctg
cacgaccgccaggcggccaccggcagcgacgtgcccgtcgacgtgatcctgtgcgaccag
cgcatgccgggcaccacgggcatccagttcctcaagcaggtgcgccagctctggcccgag
atcgcccgcatcgtgatctccgggcacaccgatgccgaggacatcatcgccggcatcaac
gaggcgggcatctaccagtacgtgctcaagccctggctgcccgaccagctgcgcgaggtg
gtcgccagcgccgccgaggcacgccgcctgcagcacgacgtgcgccgcatcgagctggag
atgcgtgccggcaccggcgtgctgcgccagcgcgtgcgcgcacggcaggagcaggtggtg
ctgcaccacgagttctcgcgcctggtgcgcgcgccgggcagcccgctggacgaggtctgc
cgcatggcgcagaaggtcgcgcgccacgacctgccggtgctgatccagggcgagtccggc
accggcaaggagctgctcgcgcgcgccatccactacagcagcccgcgcgcctcggccgcc
ttcgtgcaggagaactgcgccgcggtgcccgacacgctgctcgagtccgagctgttcggc
cacaagcgcggcgccttcaccggcgcctaccaggaccacgtcggcctgttccagcgcgcc
aacggcggcacgatcttcctcgacgagatcggcgacacctcgcccaccttccaggtcaag
ctgctgcgcgtgttgcaggaaggcgaggtgcggccggtgggcgccacgcaggcggtggcg
gtggacgtgcgcgtgatcgccgcgacccaccgcgacctggaggccgaggtgcgcgccggc
cgcttccgcgaggacctgtactaccgcctggccggggtatcgctggcgctgccgcccctg
cgcgagcggccgatggacctgaagctgctcgccgagaccctgctgcggcaggcgagcgag
gacctctccaagccctgcgagggcttcaccgatgaggccctcgcctgcctggtggactac
ccctggcccggcaacatccgcgagctgcgcaacgagatctaccgcgcgctcgcgctcagc
gacgagccggtgatcggtgccagcgtgctgtcgccgcgcgtgctgcgcgggcgctcgggt
gccgagctcaacggccacggcacgcagccggtgcgcctgcccgagaccggcagcctgcag
gagcggctcgacgcgctcgaggccgccatcctcaaggagaccctgctgcgcctgcgctgg
aacaagacccacgcggcgcgcgagctgggcctgtcgcgcgtcggcctgcgccagaagctg
gtgcgcctgggcctcgaggagaaatga

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