Caldimonas thermodepolymerans: IS481_01250
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Entry
IS481_01250 CDS
T06911
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sthm
Caldimonas thermodepolymerans
Pathway
sthm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IS481_01250 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sthm03019
]
IS481_01250 (recQ)
03400 DNA repair and recombination proteins [BR:
sthm03400
]
IS481_01250 (recQ)
Enzymes [BR:
sthm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IS481_01250 (recQ)
Messenger RNA biogenesis [BR:
sthm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IS481_01250 (recQ)
DNA repair and recombination proteins [BR:
sthm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IS481_01250 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QPC31844
LinkDB
All DBs
Position
251346..253253
Genome browser
AA seq
635 aa
AA seq
DB search
MPADTATPPRPAAPSRHPLDILREVFGYDSFRGQQAAIVEHVTAGGDALVLMPTGGGKSL
CYQIPAIARHRGGRGVTVVVSPLIALMHDQVGALEEVGVHAAFLNSTLSLEEAQRVEREM
MGGRLTLLYAAPERVTTPRFLAQLDSLHQRGLLSLFAIDEAHCVSQWGHDFRAEYLALNV
LHERYADVPRIALTATADEHTRADIIERLQLQDARVFISSFDRPNIRYTIVEKDNPRAQL
LRFIRDEHEDEAGIVYCQSRRKVEETAAWLTAEGIPALPYHAGLDAEVRQRHQDRFLRED
GLVMVATIAFGMGIDKPDVRFVAHLDLPKNIESYYQETGRAGRDGLPAEAWMAYGLADVV
NQRRMIDESPASDEFKRVQRGKLDALLALAETHECRRVRLLGYFGEASQPCGNCDNCLHP
PATWDATEAARKLLSCIYRFQQHGAHVGPRAFGAGHLIDVLRGKRTEKVAQYQHEALSTF
GIGADLSEAQWRSVLRQLVALGHVVAEGEYNTLRLTESARTVLRGEVRLQLREASEPARR
GRTARSRGADGGRARAVPADLDADALARFEALRAWRSEVAREHNLPAYLVFNDATLAEMA
RVHPGTLGELAGISGVGAKKLEAYGQEILRVLAGR
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagacaccgccacgccgccccgccccgccgcccccagccggcacccgctcgac
atcctgcgcgaggtgttcggctacgacagcttccgcggccagcaggcggcgatcgtcgag
cacgtcaccgccggcggcgacgcgctggtgctgatgcccaccggcggcggcaagtcgctg
tgctaccagatcccggcgatcgcgcgccaccgcggcgggcgcggcgtcacggtggtggtc
tcgccgctgatcgcgctgatgcacgaccaggtcggcgcgctggaggaggtcggcgtgcac
gcggccttcctcaactccacgctgtcgctggaggaggcccagcgcgtcgagcgcgagatg
atgggcgggcgcctgaccctgctgtatgccgcgcccgagcgcgtgaccacgccgcgcttc
ctcgcccagctcgattcgctgcaccagcgcgggctgctgagcctgttcgcgatcgacgag
gcgcactgcgtctcgcagtgggggcacgatttccgcgccgagtacctggcgctcaacgtg
ctgcacgagcgctacgccgacgtgccgcgcatcgcgctgaccgccaccgccgacgagcac
acccgcgccgacatcatcgagcggctgcagctgcaggacgcacgcgtcttcatcagcagc
ttcgaccggcccaacatccgctacaccatcgtcgagaaggacaacccgcgcgcccagctg
ctgcgcttcatccgcgacgagcacgaggacgaggccggcatcgtctactgccagtcgcgc
cgcaaggtcgaggagaccgccgcctggctgaccgccgagggcatcccggcgctgccctac
cacgccgggctggacgccgaggtgcgccagcgccaccaggatcgcttcctgcgcgaggac
gggctggtgatggtggccacgatcgcgttcggcatgggcatcgacaagcccgacgtgcgc
ttcgtcgcgcacctggacctgcccaagaacatcgagagctactaccaggaaaccggccgc
gccggccgcgacggcctgcccgccgaggcctggatggcctacggcctggccgacgtggtc
aaccagcgccgcatgatcgacgagagcccggccagcgacgagttcaagcgcgtgcagcgc
ggcaagctcgacgcgctgctggcgctggcggaaacccacgagtgccgccgggtgcggctg
ctcggctacttcggcgaggccagccagccctgcggcaactgcgacaactgcctgcacccg
ccggccacctgggatgccaccgaggccgcgcgcaagctgctgtcgtgcatctaccgcttc
cagcagcacggtgcgcacgtcgggccgcgcgccttcggcgccgggcacctgatcgacgtg
ctgcgtggcaagcgcaccgagaaggtcgcgcagtaccagcacgaggcgctcagcaccttc
ggcatcggcgccgacctgtccgaggcgcagtggcgctcggtgctgcgccagctggtcgcg
ctgggccacgtggtcgccgaaggcgagtacaacacgctgcgcctgaccgaaagcgcgcgc
accgtgctgcgcggcgaggtgcggctgcagctgcgcgaggcgagcgaacccgcgcggcgc
ggccggacggcccgctcgcgcggcgccgacggcgggcgcgcccgcgccgtgccggccgac
ctggatgccgacgcgctggcgcgcttcgaggcgctgcgcgcctggcgctccgaggtcgcg
cgcgagcacaacctgcctgcctacctggtgttcaacgacgcgacgctggccgagatggcg
cgcgtgcaccccggcacgctgggcgagctggccgggatcagcggcgtcggcgcgaagaag
ctggaagcctacgggcaggagatcctgcgcgtgctggccggccgctga
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