Caldimonas thermodepolymerans: IS481_04675
Help
Entry
IS481_04675 CDS
T06911
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sthm
Caldimonas thermodepolymerans
Pathway
sthm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IS481_04675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sthm03019
]
IS481_04675
03009 Ribosome biogenesis [BR:
sthm03009
]
IS481_04675
Enzymes [BR:
sthm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IS481_04675
Messenger RNA biogenesis [BR:
sthm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IS481_04675
Ribosome biogenesis [BR:
sthm03009
]
Prokaryotic type
rRNA processing factors
IS481_04675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QPC32470
LinkDB
All DBs
Position
complement(951030..953948)
Genome browser
AA seq
972 aa
AA seq
DB search
MKRMLINATQQEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFREGVDVRNAKISDVIREGQELLVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDREELKEALDQLQYPKGMSLIARTAGIGRSVAELQ
WDLNYMLQLWAAIENAANAGKGAFLIYQESSLVIRAIRDYFTADIGEILIDTDDIYEQAK
QFMHHVMPDNEHRVKRYRDDAPLFSRFQIEHQIESAYSRTVQLPSGGAIVIDHTEALVSI
DVNSARATRGGDIEETATRTNLEAADEIARQMRLRDLGGLIVVDFIDMEESKNRREVEQR
LREALRQDRARVQFSSISKFGLLELSRQRLRPALSEGSHITCPRCNGTGHIRDTESSALQ
ILRMVQEEAMKENTAAVHVQVPVEVTSYLLNEKRTEITKIELKQRVTVLLVPNKHLETPN
YKLERLRHDDPRLENLQASYTMIEEPDDEVGITRRDRSSKPKQEPVIKGILPDQPAPVAP
PKPEPAPAPVAAPAPAPAPAAPASGGFFAWLKRLFVGEPQPVPAPAPAPAPATPAAREGQ
EGRRRGEQRRNGRDGNRDGRKDGRERNRGANRQGEAATTEARAETPRKEREPRDAQQREA
GSQDNRQRQERRPRPERAEAAALAAAAAVANEAPADVGFADTVPQDGGDAGEGQQQQREG
RRRRRGGRGRRDRDTAAEAVTGQEGTPDTAPAEAAAEAAPVEPRAEPPVTDAVVPVETAA
VAAEGDDNLGSTAGDAASDAEAPREGEGRRRRGRDRYRRDRRERDANGAAPAAGEDFVSE
AAVVEGAATPLPLATPEVQPQVQPEPVAAPVEAVAEAAAEPAAVAPYVLPCDELRQVASN
AGLEWIQSDDEKVRAAQAAIAAEPPPVRVPREPKPVAAIDDGPLVLVETRKDLAQFALPL
EGGQADTARPVA
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaatgcgacccagcaggaagagcggcgcctggccatcgtcgac
ggccagaagctgctcgacttcgagaccgagatcgagggtcgcgaacaacgcaagggcaac
atctacaaggccgtcgtcacgcgcgtcgagccctcgctggaagcctgcttcgtcgactac
ggcgaggaccgccacggcttcctgcccttcaaggaaatctcgcgccagtacttccgtgaa
ggcgtcgacgtccgcaacgccaagatctccgacgtgatccgcgagggccaggaactgctg
gtccaggtcgagaaggaagagcgcggcaacaagggtgcggcgctgaccaccttcatctcg
ctggccggccgctacctggtgctgatgcccaacaacccgcgcggcggcggcgtctcgcgc
cgcatcgagggcgaggaccgcgaggagctcaaggaagcgctggaccagctgcagtacccc
aagggcatgagcctgatcgcccgcaccgcgggcatcggccgcagcgtcgccgagctgcag
tgggacctgaactacatgctgcagctgtgggccgcgatcgagaacgcggccaacgccggc
aagggtgctttcctgatctaccaggaatcctcgctggtgatccgcgcgatccgcgactac
ttcaccgcggacatcggcgagatcctgatcgacaccgacgacatctacgagcaggccaag
cagttcatgcaccacgtgatgcccgacaacgagcatcgcgtgaagcgctaccgcgacgac
gcgccgctgttctcgcgcttccagatcgaacaccagatcgagtcggcctactcgcgcacc
gtgcagctgccctcgggtggcgccatcgtgatcgaccacaccgaggcgctggtgtccatc
gacgtcaactccgcccgcgccacgcgcggcggcgacatcgaggaaaccgccacccgcacc
aacctggaggcggccgacgagatcgcccgccagatgcgcctgcgcgacctgggcggcctg
atcgtcgtggacttcatcgacatggaggagtccaagaaccgccgcgaggtcgagcagcgg
ctgcgcgaggcgctgcgccaggaccgcgcgcgcgtgcagttcagctcgatcagcaagttc
ggcctgctcgaactgagccgccagcgcctgcgcccggccctctcggaaggcagccacatc
acctgcccgcgctgcaacggcacgggccacatccgcgacaccgagtcctcggcgctgcag
atcctgcgcatggtgcaggaagaggcgatgaaggagaacaccgccgccgtgcacgtgcag
gtgccggtcgaagtgacctcctacctgctcaacgagaagcgcaccgagatcaccaagatc
gagctcaagcagcgcgtcacggtgctgctggtgccgaacaagcacctcgagaccccgaac
tacaagctggaacgcctgcgccacgacgacccgcgcctggagaacctgcaggccagctac
acgatgatcgaggagccggacgacgaggtcggcatcacccggcgcgaccgcagcagcaag
cccaagcaggagccggtgatcaagggcatcctgcccgaccagccggccccggtcgccccg
cccaagcccgaacccgcgcccgccccggtggcggccccggcgcccgcgccggcgcctgcc
gcgcccgcgagcggcggcttcttcgcctggctcaagcgcctgttcgtcggcgagccgcaa
ccggtgcccgcgcccgccccggcgcctgcgccggccacgccggccgcccgcgagggccag
gagggacgccgccgaggcgaacagcgccgcaacggccgcgacggcaaccgcgacggccgc
aaggacggccgcgagcgcaaccgcggcgcgaacaggcagggcgaggccgccacgaccgaa
gcccgcgccgagacgccgcgcaaggaacgcgagccacgcgacgcgcagcagcgcgaggcc
ggcagccaggacaaccgccagcgccaggaacgccgcccgcgtcctgaacgcgccgaggcg
gccgccctggccgctgcggccgcggtggccaacgaggcgccggccgacgtcgggtttgcc
gacaccgtgccgcaggacggcggcgacgccggcgaaggccagcagcaacagcgcgagggt
cgccgccgccgccgcggcggccgtggacgccgtgaccgcgacaccgccgccgaagccgtg
accggccaggagggcacgcccgacaccgcgccggccgaggccgcggctgaagccgcaccg
gtcgagccacgcgccgagccgccggtgaccgacgccgtggtgccagtggagaccgccgcc
gtggccgccgaaggtgatgacaacctgggctcgaccgccggggatgccgccagcgacgcc
gaggcgccgcgcgaaggcgaaggccgccgccggcgcggccgcgaccgctaccgtcgcgac
cgccgcgaacgcgacgccaacggtgccgcccctgctgcgggcgaggacttcgtctccgag
gcggccgtcgtcgaaggcgccgccacgccgctaccgctggccacgcccgaggtgcaaccc
caggtccagcccgagcccgtggccgcgccggtcgaagcggtcgccgaggccgcagccgag
ccggccgctgtggcgccctacgtgctgccttgcgacgagctgcgccaggtcgccagcaat
gccggcctggagtggatccagtcggatgacgagaaggtgcgcgccgcgcaggccgccatc
gcggccgagccgccgccggtgcgcgtgccgcgcgagcccaagcccgtggccgcgatcgac
gacggcccgctggtgctggtcgagacccgcaaggacctcgcccagttcgcgctgccgctg
gaaggcggccaggccgacaccgcccgtccggtggcctga
DBGET
integrated database retrieval system
