Caldimonas thermodepolymerans: IS481_05890
Help
Entry
IS481_05890 CDS
T06911
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sthm
Caldimonas thermodepolymerans
Pathway
sthm03410
Base excision repair
sthm03430
Mismatch repair
sthm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IS481_05890 (recJ)
03430 Mismatch repair
IS481_05890 (recJ)
03440 Homologous recombination
IS481_05890 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sthm03400
]
IS481_05890 (recJ)
DNA repair and recombination proteins [BR:
sthm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
IS481_05890 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
IS481_05890 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IS481_05890 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
QPC32687
LinkDB
All DBs
Position
complement(1230208..1231923)
Genome browser
AA seq
571 aa
AA seq
DB search
MKIILRECPPRAAWALEQAGVHPLLARLYAARGIASKDELDDSLARLLPPTELRGATEAA
RFLADAIQQGRRLCVVADYDCDGATACAVALRGLRLLGARPGTLSYVVPDRAVHGYGLSP
AVVELARQQRPDVLVTVDNGIASIEGVAAARAHGLDVIITDHHLPAMVGERVVLPEANVI
VNPSQPGCGFASKSLAGVGVMFYVLLAVRAELRARGAFADGAQPRLDALLDLVALGTVAD
VVKLDANNRRLVAQGLKRIRAGRMHAGIAALFAAARRDPARATAFDFGFALGPRINAAGR
LADMTLGIECLLTDDPQRAAELAQTLDAINRERRDVEAGMREQAEAMLERLMPAGEPPAA
LAIFDPDFHEGVVGIVASRLKDQLHRPTFVFALGQDGLLKGSGRSIPGFHLRDALDLVSK
RHPQVLKKFGGHAMAAGATLAEEHFPTFERAFQEVADEWLEPHQLHRTLATDGPLEPQWF
VPEVVQVLEQQVWGQAFEAPVFSDEVEIVSQRIVGERHLKLTVRHAGMLREAIWFGRSEP
LPPRALLAYRLSLDEFNGNRRVQMVVEGVAD
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcatcctgcgcgaatgtccgccgcgcgccgcctgggcgctggaacaggcgggc
gtccacccgctgctggcgcggctgtacgccgcgcgcggcatcgccagcaaggacgagctg
gacgactcgctcgcccgcctgctgccccccaccgagctgcgcggcgccaccgaggcggcg
cgcttcctggccgatgcgatccagcagggccgccggctgtgcgtcgtcgccgactacgac
tgcgacggcgcgaccgcctgcgccgtggccttgcgcgggctgcgcctgctcggcgcccgg
cccggaacgctgagctacgtcgtgcccgaccgcgcggtgcacggctacgggctgtcaccg
gccgtggtcgagctggcgcgccagcagcgcccggacgtgctggtgacggtggacaacggc
atcgccagcatcgagggcgtggccgcggcgcgcgcgcacgggctggacgtgatcatcacc
gaccaccacctgccggccatggtcggcgagcgcgtcgtgctgcccgaggccaacgtgatc
gtcaaccccagccagccgggctgcggcttcgccagcaagtcgctggccggggtgggcgtg
atgttctacgtgctgctcgcggtgcgcgccgagctgcgcgcccgcggcgccttcgccgac
ggcgcgcagccgcgcctggatgcgctgctggacctggtcgcgctcggcacggtggccgac
gtggtcaagctcgacgccaacaaccgccgcctggtcgcgcaggggctcaagcgcatccgc
gccgggcgcatgcacgccggcatcgcggccctgttcgccgccgcgcggcgtgacccggcg
cgcgccaccgcgttcgacttcggcttcgcgctcggcccgcgcatcaacgccgccgggcgc
ctggccgacatgacgctgggcatcgagtgcctgctgaccgacgacccgcagcgcgccgcc
gagctggcgcagacgctggatgcgatcaaccgcgagcggcgcgacgtcgaggcgggcatg
cgcgagcaggccgaggccatgctcgagcgcctgatgccggccggcgagccgcccgcggcg
ctggccatcttcgacccggacttccacgaaggcgtggtcggcatcgtcgcctcgcggctc
aaggaccagctgcaccgcccgaccttcgtgttcgcgctcgggcaggacgggctgctcaag
ggttccgggcgctcgatcccgggcttccacctgcgcgatgcgctggacctggtcagcaag
cgccacccgcaggtgctgaagaagttcggcggccacgcgatggcagccggcgcgacgctg
gccgaggaacatttcccgaccttcgaacgggccttccaggaggtcgccgacgaatggctg
gagccgcaccagctgcaccggacgctggccaccgacgggccgctggagccgcagtggttc
gtgcccgaggtggtgcaggtgctggaacagcaggtctggggccaggccttcgaggccccg
gtgttcagcgacgaggtcgagatcgtctcgcagcgcatcgtcggcgagcgccacctgaag
ctcaccgtgcgccatgccgggatgctgcgcgaggcgatctggttcggccgcagcgagccg
ctgccgccgcgcgcgctgctggcctaccgcctgtcgctggacgagttcaacggcaaccgg
cgcgtgcagatggtggtcgagggcgtggccgactga
DBGET
integrated database retrieval system
