Caldimonas thermodepolymerans: IS481_06125
Help
Entry
IS481_06125 CDS
T06911
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
sthm
Caldimonas thermodepolymerans
Pathway
sthm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IS481_06125 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sthm03019
]
IS481_06125 (pcnB)
Enzymes [BR:
sthm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
IS481_06125 (pcnB)
Messenger RNA biogenesis [BR:
sthm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IS481_06125 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QPC32730
LinkDB
All DBs
Position
1278811..1280322
Genome browser
AA seq
503 aa
AA seq
DB search
MIKKLISKLLGKSAPAAGKTAGKRHLGKRVEVPKNEHGIDRSLVDERAVKVVQTLTDAGY
EAYIVGGAVRDLLLGKRPKDFDVATNATPEQVKALFRRAFIIGRRFRIVHVVFGRGRDHE
VIEVSTFRAQVDASEAEQVNGNEKTAKSELAGKSHVVDASGRVLRDNVWGPQIEDAARRD
FTINAMYYDPQREIVVDYHHGIRDAKKRLLRMIGDPEQRYREDPVRIIRAVRFAAKLGFE
IEGKTREPIARMAPLLENVPASRMFDEMIKLLQTGHALASLEQLRAHGLHRGVFPILDVV
LDETRRHDGREKFVRLALADTDRRVAEGKPVAPSFMLAAMLWHDVLDRWERRRQQGEHPF
PALQAAIEEVFDARIGDISGRGKLAADMREIWMMQPRFEKRAGNGPMVLVEQPRFRAGFD
FLRLRAEAGEVDEALARWWEEFSLAEMPRRRELLELARQQDQARRTGDKPGEAAPAKKRR
RRRRKPAGEGAAAAADGAVPASD
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaaactcatcagcaagctgctcggcaagtccgcgcccgccgcgggcaagacc
gccggcaagcgccatctcggcaagcgcgtggaagtgcccaagaacgagcacggcatcgac
cgctcgctggtcgacgaacgtgccgtcaaggtggtgcagacgctcaccgacgccggctac
gaggcctacatcgtcggcggggcggtgcgcgacctgctgctcggcaagcgtcccaaggac
ttcgacgtggccaccaacgccacgcccgagcaggtcaaggcgctgttccggcgtgccttc
atcatcggccggcgcttccgcatcgtgcacgtggtgttcgggcgcgggcgcgaccacgag
gtgatcgaggtctccaccttccgggcccaggtcgatgcctccgaggccgaacaggtcaac
ggcaacgagaagaccgccaagtccgagctggcgggcaagtcccacgtggtcgacgccagc
ggccgcgtgctgcgcgacaacgtctggggtccgcagatcgaggacgcggcgcgccgcgac
ttcacgatcaatgcgatgtactacgacccgcagcgcgagatcgtggtcgactaccaccac
ggcatccgcgatgcgaagaagcgcctgctgcgcatgatcggcgatccggagcagcgctac
cgcgaggacccggtgcgcatcatccgcgcggtgcgcttcgccgccaagctgggcttcgag
atcgaggggaagacgcgcgagccgatcgcccgcatggccccgctgctggagaacgtgccg
gcctcgcgcatgttcgacgagatgatcaagctgctgcagaccggccatgcgctggcctcg
ctggagcagctgcgcgcgcatggcctgcaccgcggcgtcttcccgatcctcgacgtggtg
ctggacgagacgcgccgccacgacgggcgcgagaagttcgtgcgcctggcgctggccgac
accgaccgccgcgtcgccgagggcaagccggtcgccccgagcttcatgctcgcggccatg
ctgtggcatgacgtgctggaccgctgggagcgccgccgccagcagggcgagcatccgttc
ccggcgctgcaggctgccatcgaggaagtgttcgacgcgcgcatcggcgacatctccggc
cgcggcaagctggccgccgacatgcgcgagatctggatgatgcagccgcgcttcgagaag
cgcgccggcaatggcccgatggtgctggtcgagcagccgcgcttccgcgccggcttcgac
ttcctgcgcctgcgcgccgaggcgggcgaggtcgacgaggcgctggcgcgctggtgggag
gagttctcgctggccgagatgccgcgccgccgcgagctgctcgagctggcccgccagcag
gaccaggcacgccgcaccggcgacaagccgggcgaggccgccccggcgaagaagcgccgc
cgccgtcgccgcaagccggccggcgagggcgcggctgctgccgcggacggggccgttccc
gccagcgactga
DBGET
integrated database retrieval system
