Caldimonas thermodepolymerans: IS481_06245
Help
Entry
IS481_06245 CDS
T06911
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sthm
Caldimonas thermodepolymerans
Pathway
sthm03030
DNA replication
sthm03430
Mismatch repair
sthm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IS481_06245 (dnaE)
03430 Mismatch repair
IS481_06245 (dnaE)
03440 Homologous recombination
IS481_06245 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sthm03032
]
IS481_06245 (dnaE)
03400 DNA repair and recombination proteins [BR:
sthm03400
]
IS481_06245 (dnaE)
Enzymes [BR:
sthm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IS481_06245 (dnaE)
DNA replication proteins [BR:
sthm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IS481_06245 (dnaE)
DNA repair and recombination proteins [BR:
sthm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IS481_06245 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QPC32752
LinkDB
All DBs
Position
1299790..1303293
Genome browser
AA seq
1167 aa
AA seq
DB search
MPFVHLRTHTEYSVVDGTLRIDDMVAAAAQDGQVALAITDLSNLFGAIKFYKAARGKGIK
PIIGADVWLEPEDAAASPGDRQPSRLLLLIQNREGYLNLCELLARGWTQNVNRAQAWLKW
EWLERLNGGLIALSGAEQGAVGQALMNRDPRRAEAVAQRLAGLFPGRFYLEVQRAGQPGN
EAHVRAVVPLAARLQLPVVATHPVQFQTPEDFEAHEARVCIAEGETLANPRRIKRFTREQ
YFKTQAEMEALFADLPSALANTVEIARRCSLTLVLGKPRLPDFPTPNGMPMEEYFRYAAH
EGLKARLEHLYPDPEERERQRPRYVERLDFEINTILQMGFPGYFLIVADFINWAKNNGCP
VGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDVDFCQSNRDRVIDY
VKEKYGRDAVSQIATFGTMAAKAALRDVGRVLGMGYGHVDGIAKLIPAPPGKTVTLKRPG
DKPDPGLIYARKEAPEIEEREKNEEEVAELLALAERVEGLVRNIGMHAGGVLIAPGKITD
FCPLYMQPGSDSVVSQYDKDDVEAIGLVKFDFLGLATLTILEMAKEFIVKRHPDQKDFDF
AKIPLDDKPTFQLLSEGKTVAVFQLESRGMQGMLRDAKPSVFEDIIALVALYRPGPMDLI
PSFVARKHGREEVVYPHPLMEEVLKETYGIMVYQEQVMQVAQRLGGYSLGGADLLRRAMG
KKKPEEMAKHRVIFAEGAAKNGIDADKANEIFDLMEKFAGYGFNKSHAAAYALLAYHTAW
LKVHYLAEFVAANMSVSIDDTDKLKVFYDDAVQLGIRFEPPDVNTGVYRFEPVADKVVRY
GLGAIKGTGQSAIEAIVQAREQGGPFRSLFDFCCRVDRSRINKRTVEALIKAGAFDAIEP
NRAALLDSISLAFEYADTQAANADQGGLFDFGDEHGSSTREPDLAATPEWSIKERLGHEK
TAIGFYLSGHLFDEYQDEVRQFAKRKIVDLIDSREPQLLAGIVSDLRIVNGQRGRVAIFK
LDDKSDVIEAVASEDLLDAHRELFKDDELLIVQGKAQPDRFSGGLRLNVVQVWDLASARC
RFGKYLRVAVNGSAPPIGELLQQFPPRRVDTEHGDLLQGLTVRLELHRESAYGELDLGDA
ARFYPSDEALRQWKREAHGGRAQVVYE
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgcccttcgtacacctgcgcacccacaccgaatattccgtcgtcgacggcaccctgcgg
atcgacgacatggtcgccgcggcggcccaggacgggcaggtggcgctggcgatcaccgac
ctgagcaacctgttcggggcgatcaagttctacaaggccgcgcgcggcaagggcatcaag
cccatcatcggcgccgacgtctggctggagcccgaggacgccgcggccagcccgggcgac
cggcagcccagccgcctgctgctgctgatccagaaccgcgagggctacctgaacctgtgc
gagctgctcgcgcgcggctggacgcagaacgtcaaccgggcgcaggcctggctcaagtgg
gagtggctggagcgcctcaacggcggcctgatcgcgctgtccggtgccgagcagggcgcg
gtcggccaggccctgatgaaccgcgacccgcgccgtgccgaggcggtcgcgcagcggctg
gcgggcctcttcccggggcgcttctacctcgaggtgcagcgcgccggccagccgggcaac
gaggcgcacgtgcgcgcggtcgtgccgctggcagccaggctgcagctgccggtggtcgcc
acgcacccggtgcagttccagacgcccgaggacttcgaggcgcacgaggcgcgcgtgtgc
atcgccgaaggcgagacgctggccaacccgcggcgcatcaagcgcttcacgcgcgagcag
tacttcaagacgcaggccgagatggaggcgttgttcgccgacctgccgagcgcgctcgcc
aacaccgtcgagatcgcgcgccgctgcagcctgacgctggtgctgggcaagccgcgcctg
ccggacttccccacgcccaacggcatgccgatggaggagtacttccgctacgcggcgcac
gagggcctgaaggcgcggctcgagcacctctaccccgacccggaagaacgcgaacgccag
cgcccgcgctacgtcgagcggctggacttcgagatcaacaccatcctgcagatgggcttc
ccgggctacttcctgatcgtggccgacttcatcaactgggcgaagaacaacggttgcccc
gtcggccccggccggggctcgggcgcgggctcgttggtcgcctacgcgctgaagatcacc
gacctggacccgctgcgctacaacctgctgttcgagcgcttcctgaacccggagcgggtg
tccatgcccgacttcgacgtggacttctgccagagcaaccgcgaccgggtcatcgactac
gtcaaggagaagtacggccgcgacgcggtctcgcagatcgccaccttcggcaccatggcg
gccaaggccgcgctgcgcgacgtgggccgcgtgctgggcatgggctacggccacgtggac
ggcatcgccaagctgatcccggcgccgccgggcaagaccgtcacgctcaagcgccccggc
gacaagcccgacccgggcctgatctatgcgcgcaaggaagcgccggagatcgaggagcgc
gagaagaacgaggaagaggtcgccgagctgctggcgctggccgagcgcgtcgagggcctg
gtgcgcaacatcggcatgcacgccgggggcgtgctgatcgccccgggcaagatcaccgac
ttctgcccgctgtacatgcagccgggcagcgactccgtggtctcgcagtacgacaaggac
gacgtcgaggcgatcggcctggtgaagttcgacttcctgggcctggccaccctgaccatc
ctcgagatggccaaggagttcatcgtcaagcggcaccccgaccagaaggacttcgacttc
gcgaagatcccgctggacgacaagcccaccttccagctgctctccgaaggcaagacggtg
gccgtgttccagctggaatcgcgcgggatgcagggcatgttgcgcgacgccaagccgagc
gtcttcgaggacatcatcgcgctggtggcgctgtaccgcccgggcccgatggacctgatc
cccagcttcgtcgcgcgcaagcacggccgcgaggaagtggtctacccgcacccgctgatg
gaggaggtgctcaaggagacctacgggatcatggtctaccaggagcaggtgatgcaggtg
gcacagcgcctgggcggctactcgctcggcggcgccgacctgctgcgccgcgcgatgggc
aagaagaagcccgaggagatggccaagcaccgggtcatcttcgccgagggcgcggccaag
aacggcatcgacgcggacaaggccaacgagatcttcgacttgatggagaagttcgcgggc
tacggcttcaacaagtcgcacgccgctgcctacgcgctgctcgcctaccacacggcgtgg
ctgaaggtgcactacctggccgaattcgtcgccgccaacatgagcgtgtcgatcgacgac
accgacaagctcaaggtcttctacgacgacgcggtgcagctgggcatccgcttcgagccg
cccgacgtcaacaccggcgtctaccgcttcgagccggtggccgacaaggtggtgcgctac
ggcctgggcgcgatcaagggcaccggccagagcgcgatcgaggccatcgtgcaggcgcgc
gagcagggcggcccgttccgcagcctgttcgacttctgctgccgcgtcgaccgcagccgc
atcaacaagcgcaccgtcgaggccctgatcaaggccggcgcgttcgatgcgatcgagccc
aaccgcgccgcgctgctcgacagcatctcgctggccttcgagtacgccgacacccaggcg
gccaacgccgaccagggcgggctgttcgacttcggcgacgagcacggctcgtcgacccgc
gagcccgacctggccgccacgcccgagtggagcatcaaggagcggctcggccacgagaag
accgcgatcgggttctacctctcgggccacctgttcgatgaataccaggacgaggtgcgc
cagttcgccaagcgcaagatcgtcgacctgatcgacagccgcgagccgcagctgctggcc
ggcatcgtcagcgacctgcgcatcgtcaacggccagcgcgggcgcgtggcgatcttcaag
ctcgacgacaagagcgacgtgatcgaggcggtggccagcgaggacctgctcgatgcacac
cgcgagctgttcaaggacgacgagctgctgatcgtgcagggcaaggcccagccggaccgt
ttctcggggggcctgcgcctcaacgtcgtgcaggtctgggacctggccagcgcccgttgc
cgcttcggcaagtacctgcgcgtggcggtcaacggttcggcaccgccgatcggcgagctg
ctccagcagttcccgcccaggcgcgtcgacaccgagcatggcgacctgctgcaggggctg
acggtgcgcctggagctgcaccgcgagtcggcctacggcgagctcgacctgggggacgcg
gcgcgcttctacccgagcgacgaggcgctgcggcaatggaagcgcgaagcgcatggcggc
cgggcgcaggtggtgtacgaatag
DBGET
integrated database retrieval system
