Caldimonas thermodepolymerans: IS481_07995
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Entry
IS481_07995 CDS
T06911
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sthm
Caldimonas thermodepolymerans
Pathway
sthm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IS481_07995 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sthm03021
]
IS481_07995 (rho)
03019 Messenger RNA biogenesis [BR:
sthm03019
]
IS481_07995 (rho)
Transcription machinery [BR:
sthm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IS481_07995 (rho)
Messenger RNA biogenesis [BR:
sthm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IS481_07995 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_5
AAA_22
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QPC33072
LinkDB
All DBs
Position
complement(1701026..1702288)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKVLHVSELIKMAESLEIENTSRMRKQELMFAIMKRRAKQGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYLSPSQIRRFNLHTGDAIEGEVRVPKDGERYFALVKVDRVN
GLTPEENKHKIMFENLTPLFPKEQFKLEREIKSEENITGRIIDLIAPIGKGQRALLVAPP
KSGKTVMMQHLAHAIVANHPEVYLIVLLVDERPEEVTEMQRTVRGEVISSTFDEPAARHV
QVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALVDTGSRMDEVIYEEFKGTGNCEIHLDRRMAEKRVYPSILI
NKSGTRREELLLKPEILQKTWILRKLLYPMDEIEAMEFILDKMKSTKNNQEFFEMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacctctctgaactgaaagtccttcacgtctcggaactcatcaagatggccgagtcg
ctggagatcgagaacaccagccgcatgcgcaagcaggagctgatgttcgcgatcatgaaa
cgccgtgccaagcagggcgagcagatcttcggcgatggtgtgctcgaggtgctgccggac
ggtttcggcttcctgcgttctcccgagaccagctacctcgcgagcaccgacgacatctac
ctgtcgccgagccagatccgccgcttcaacctgcacaccggcgacgccatcgaaggcgag
gtgcgcgtgcccaaggacggcgagcgttatttcgcgctggtcaaggtcgaccgtgtcaac
ggcctgacgccggaggagaacaagcacaagatcatgttcgagaacttgacgccgctcttc
ccgaaagagcagttcaagctcgaacgcgagatcaagtccgaagagaacatcaccggccgc
atcatcgacctgatcgcaccgatcggcaaaggccagcgcgcgctgctggtggccccgccc
aagagcggcaagacagtgatgatgcagcacctggcgcacgccatcgtcgccaaccatccc
gaggtctacctgatcgtgctgctggtcgacgagcgccccgaggaagtgaccgagatgcag
cgcaccgtgcgcggcgaggtcatcagctccacgttcgacgagccggccgcgcgccacgtg
caggtcgccgagatggtgatcgagcgcgccaagcgtctggtcgagctgaagaaggacgtg
gtgatcctgctggactcgatcacccgcctggcgcgcgcctacaacaacgtgctgccctct
tccggcaaggtgctgaccggcggcgtggacgccaacgcgctgcagcgcccgaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggctcgctgaccatcatcggcacggcgctg
gtcgacaccggcagccgcatggacgaggtgatctacgaggagttcaagggcaccggcaac
tgcgagatccacctggaccgccgcatggccgagaagcgcgtctacccctcgatcctgatc
aacaagagcggcacgcgccgcgaggagctgctgctcaagcccgagatcctgcagaagacc
tggatcctgcgcaagctgctctacccgatggacgagatcgaggcgatggagttcatcctg
gacaagatgaagtccacgaagaacaaccaggagttcttcgagatgatgcgccgcggcggc
tga
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