Caldimonas thermodepolymerans: IS481_08005
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Entry
IS481_08005 CDS
T06911
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
sthm
Caldimonas thermodepolymerans
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sthm03400
]
IS481_08005
Enzymes [BR:
sthm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IS481_08005
DNA repair and recombination proteins [BR:
sthm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
IS481_08005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Cas_Cas4
Motif
Other DBs
NCBI-ProteinID:
QPC33074
LinkDB
All DBs
Position
1703002..1705662
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AA seq
886 aa
AA seq
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MSARERWAPRPTADPWPQIAERVRRFAEERRLEPRHLLVLLPFAQHLPLAREAWVRTCPA
GWMPRFETTQTLRERLPAASPAADGPSGDIATDRLAAARMLGQKQGLKEMRERDPAMFRH
WVHGVVEMAHEFMQVAHAVAPARRAQWWDRAHAALGAHGGPGAMELTLARVALAWAAQRE
AGPADALFALRPQGWVAVHAGGPEPLVRALLDEAEAPVLEIDTDPAGDALFEGVSPDAQL
LPCLDFEDEAQMAAAQVLRHLAAGEAPVALIAQDRVLVRRVRALLARQAIAVRDETGWRL
STTRAGACVAGLLRLAQPRAGTDDLLDWLKSGFTAGLAEDGAEGLAALETVLRRRLWSAL
QEVHEPALPERGRVLWRAALEALAPLHGEPRRVSLASWNDRLRSALQAGGVWDALAADGA
GAEVLRALRLPGAAADDPGFLQQARAASMDLADYAAWVDSLLEAGAYAPEAPAQVEVVVT
PLPRAMLRPFAAVVMPGCDEQRLGPAAFAPWLSERDRAALGLPTRVLSLQQQALAFAHLL
RQPRVSLLWRQSQDGEPLDPGALVERLQLERSRRADLQVPVEDPRLRVPVQPSPQGPTAP
TAPGLLPEALSATGYEALRNCPYRFFALYMLGLAEADELDDEIERRDYGIWLHAVLQRFH
ELHRQAPLDEAGEVERLVAIGAQERAAQQLDEAAFLPYALRLRELARLYVRWLFEHERGG
GQVQASEVKLQARLPGFEQVCLKGTLDRIDRVRDGQGEATLVVDYKTSRLDTLKNRVKEP
LEDTQLAFYAALLQLAGQAPDGGALRAMYLALDGNEVGQAEHQDVAASAQLLLEGMRQDL
ERIAGGAALPPLGEGTVCEYCEAQGLCRKGHWSGPDEPLATGVASA
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcacgagaacgctgggctccgcgcccgaccgccgacccctggccgcagatcgcc
gagcgcgtgcggcgtttcgccgaggagcggcgactggagccccgtcacctgctggtgttg
ctgccgttcgcgcagcacctgccgctggcgcgcgaggcctgggtgcgcacctgcccggcc
ggctggatgccgcgcttcgagaccacgcagacgctgcgcgagcgcctgcctgcggcgtcg
cccgcagccgacgggcccagcggcgacatcgccaccgaccggctcgccgcggcgcgcatg
ctggggcagaagcagggcctgaaggagatgcgcgagcgcgacccggcgatgttccggcac
tgggtgcacggcgtggtcgagatggcgcacgagttcatgcaggtggcccatgcggtggcg
ccggcgcggcgtgcccagtggtgggatcgtgctcatgcggcgctcggcgcccacggcggc
ccgggggcgatggagctgacgctcgcacgcgtggccctggcctgggccgcgcagcgcgag
gccgggccggccgatgcgctgttcgcgctgcggccgcagggctgggtcgcggtgcatgcg
ggcgggcccgagccgctggtgcgcgcgctgctggacgaggccgaggcgccggtgctcgag
atcgacaccgacccggccggggacgcgctgttcgagggcgtgtccccggacgcgcagttg
ctgccttgcctggacttcgaggacgaggcgcagatggccgcggcccaggtgctgcgacac
ctcgcggcgggcgaggcgccggtggcgctgatcgcgcaggaccgcgtgctggtgcggcgc
gtgcgcgcgctgctggcgcgccaggcgatcgccgtgcgcgacgagaccggctggcgcctg
tcgacgacgcgtgcgggtgcctgcgtggccgggctgctgcgcctggcccagccgcgcgcg
ggcaccgacgacctgctggactggctgaaatccggcttcacggccggcctggccgaggac
ggcgccgagggcctcgcggcgctggagaccgtgctgcggcgccgcctgtggagcgcgctg
caggaggtgcacgagccggccctgcccgaacgcggccgggtgctgtggcgcgccgcgctc
gaggcgcttgcgcccttgcacggtgaaccgcgccgggtgtcgctggccagctggaatgac
cggctgcgcagcgccttgcaggccggcggcgtgtgggacgcgctggccgccgacggtgcc
ggggccgaggtgctgcgtgcgctgcggctgccgggcgcggcggccgacgatcccgggttc
ctgcagcaggcgcgcgcagccagcatggacctggccgactacgcggcctgggtcgacagc
ctgctggaggcgggggcctacgccccggaagccccggcacaggtcgaggtggtggtcacg
cccctgccgcgtgcgatgctgcggccgttcgcggcggtggtgatgcccggctgcgacgag
cagcgcctcgggccggcggctttcgcgccgtggctgtccgagcgggaccgggccgcgctg
ggcctgccgacgcgcgtgctgtcgctgcagcagcaggcgctcgcctttgcgcacctgctg
cgccagccgcgcgtgagcctgctgtggcggcagtcgcaggatggcgagccgctcgatccc
ggcgcgctggtcgagcgcctgcagctggagcgctcgcggcgtgccgacctgcaggtgccc
gtcgaggatccgcgcctgcgggtgccggtgcagcccagcccgcaggggccgaccgcgccc
actgcgccgggcctcttgcccgaggcactgagcgccacggggtacgaggccctgcgcaac
tgcccgtaccgcttcttcgcgctgtacatgctggggctggccgaagcggacgagctggac
gacgagatcgagcggcgcgactacggcatctggctgcacgcggtgctgcagcgcttccac
gagctgcaccggcaggcgccgctcgacgaggccggcgaggtggagcgcctggtggccatc
ggcgcacaggagcgcgcggcgcagcagctcgacgaggcggcgttcctgccgtacgcgctg
cggctgcgcgagctggcccggctgtacgtgcgctggctgttcgagcacgagcgcggcggc
gggcaggtgcaggccagcgaggtgaagttgcaggcacgcctgccgggcttcgagcaggtg
tgcctgaagggcacgctggaccgcatcgaccgggtgcgcgacgggcagggcgaggccacg
ctcgtggtggactacaagaccagccggctcgacacgctgaagaaccgcgtcaaggagccg
ctggaggacacccagctggccttctacgccgccttgctgcagctggccgggcaggcgccg
gacggcggcgcgctgcgggcgatgtacctggcgctggacggcaacgaggtcgggcaggcc
gagcaccaggacgtggctgccagcgcgcagctgctgctcgagggcatgcggcaggacctg
gagcgcattgccggcggcgcggcgctgccgccgctgggcgagggcacggtctgcgagtac
tgcgaggcgcaggggctgtgccgcaaggggcactggagcggcccggacgagccgctcgca
acgggagtcgcatcggcatga
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