Caldimonas thermodepolymerans: IS481_08010
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Entry
IS481_08010 CDS
T06911
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
sthm
Caldimonas thermodepolymerans
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sthm03400
]
IS481_08010
Enzymes [BR:
sthm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IS481_08010
DNA repair and recombination proteins [BR:
sthm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
IS481_08010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_22
AAA_30
DEAD
DUF5947
DUF6500
Motif
Other DBs
NCBI-ProteinID:
QPC33075
LinkDB
All DBs
Position
1705659..1708943
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AA seq
1094 aa
AA seq
DB search
MNGAAYRVDSALVAREEFYRIACDPARSVVVEACAGAGKTWMLVSRILRALLDGVEPQQI
LAITFTKKAAAEMRHRLMQWLAQFAACSEEQRVQELVARGLDPAAARRQAPVLGGLYERL
LCSPQAVEIRTFHAWFSQLMRAAPLEVLDELGLPPQAELLEDVEELKPQAWRQFLAAVAA
DEALRADFEALVLQRGRHTAQQWLLNVIDKRVEFELAARHGVLERSVPPAAALDAAYAGL
SHPAQRVRSPAVASLLREVAQALGRQGKATPQKQAALLQQALEEADDLRCVEGAFAALCT
KAGEPRKHLDAPGLDEAVAFLRDIRVAVVQHEAHLEHQRMVRLAQVLLEQYARVKRARGL
ADMADLERCALRLLQDVQLAGWLQERLDARIRQVLIDEFQDTNPLQWQALSSWLGSYAGA
GGGASGQQPPGIFIVGDPKQSIYRFRRAEPRVFDAAKELVRELGGAVLACDHTRRNAPGV
LEAVNAVFRAAQDERAYGEFRAHTTEPGHAHAGEVAAIERVERPAKETAEEGEAGWRDSL
VTPRHEPEVLLRLQEARRVAGHIARLVAQGRRPGDIFVLSRKRASLRVLAEALRELHLPF
ATPEDSVLMDALEVRDVVALLDALVSPQHDLSLAHALRSPIFGASDADLVALAQAARAGG
RGWMQALAGLPEEALSPALQRARRLLAAWREDALRLPPHDLLDRIVAQGELRARYAAAVP
AELRSAALAHLDALLALALELDGGRYATPYKLVRALRRRPLSVKSRTDAQAVQLLTVHGA
KGLEAPVVFIMDTDSASDRPERTTALIDWPAEAACPDCFAFIASEARVPPSLAAVLEHER
QARAREELNGLYVAMTRAREQLVFSATAPHRRPSERTWWERIGEVPGVVRWEGEPEPAPA
AAAGPGAAAPLVLCELPALPRAAEAVAPSVPQAATTARVGEAVHRALEWLTARPDPLDGW
RETVAAAARAFGLDDSQRAHAEHVVARVLTSDAFRPFLAGERLRWAGNEVPLAHGGQVLR
VDRLVQLADGEGCQWWVLDYKLDHAPHELAAYREQLARYREAVREALAGREPHAQVQVRA
AFVTGRGEVIELPA
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgaacggggccgcctaccgtgtcgacagcgcgctggtggcgcgcgaggagttctaccgc
atcgcctgcgacccggcgcgcagcgtggtcgtcgaggcctgcgccggggccggcaagacc
tggatgctggtctcgcgcatcctgcgcgcgctgctcgacggcgtggagccgcagcagatc
ctggcgatcacgttcacgaagaaggccgcggccgagatgcgccaccgcctgatgcagtgg
ctggcgcagttcgccgcctgcagcgaggagcagcgcgtgcaggagctggtggcgcgcggc
ctggacccggcggcggcgcgccgccaggcgccggtgctgggcgggttgtacgagcgcctg
ctgtgcagcccgcaggcggtcgagatccgcaccttccacgcctggttctcgcagctgatg
cgcgcggcgccgctcgaggtgctggacgagctgggcctgccgccgcaggccgagctgctc
gaggacgtcgaggaactcaagccccaggcctggcggcagttcctcgcggcggtcgcggcc
gacgaggcgctgcgcgccgacttcgaggcgctggtgctgcagcgcggccggcacaccgcg
cagcaatggctgctcaacgtgatcgacaagcgcgtggagttcgagctggccgcgcggcac
ggcgtgctggagcgcagcgtgccgcccgccgcggcgctggatgcggcgtacgcggggctt
tcgcatcccgcgcagcgcgtgcgctcgccggcggtcgcctcgctgctgcgcgaggttgcg
caggcgctggggcgacagggcaaggccacgccgcagaagcaggccgcgctgttgcaacag
gcgctggaggaggccgacgacctgcgctgcgtcgagggggcgttcgccgcgctgtgcacc
aaggccggcgagccgcgcaagcacctcgatgcgcccggcctcgacgaggccgtggccttc
ctgcgcgacatccgggtcgcggtcgtgcagcacgaggcgcacctggagcaccagcgcatg
gtgcggctggcgcaggtgctgctcgagcagtacgcgcgcgtcaagcgcgcacgcggactg
gccgacatggccgacctggagcgctgcgcgctgcggctgctgcaggacgtgcagctggcc
ggctggctgcaggagcggctggacgcgcgcatccgccaggtgctgatcgacgagttccag
gacaccaacccgctgcaatggcaggcgctgtcgagctggctggggtcctacgccggcgcg
ggcggtggcgcgagcggccagcagccgcccggcatcttcatcgtcggcgacccgaagcag
agcatctaccgcttccgccgcgccgagccgcgcgtcttcgacgccgcgaaggaactggtg
cgcgagctcggcggtgcggtgctggcctgcgaccacacgcggcgcaacgcgccgggcgtg
ctcgaggcggtcaacgcggtgttccgcgcggcgcaggacgagcgcgcctacggcgagttc
cgcgcccacaccaccgagccggggcatgcgcatgcgggcgaggtggcggcgatcgagcgg
gtggagcgcccggccaaggagacggcggaggagggcgaggccggctggcgcgacagcctc
gtcacgccgcgccacgagcccgaggtactgctgcgcctgcaggaggcgcgccgcgtggcc
ggccacatcgcgcggttggtcgcgcagggccgccggccgggcgacatcttcgtgctcagc
cgcaagcgcgccagcctgcgcgtgctggccgaggcgctgcgcgagctgcacctgccgttc
gccacgcccgaggacagcgtgctgatggacgcgctggaggtgcgcgacgtggtggcgctg
ctggatgcgctggtctcgccgcagcacgacctgtcgctggcccatgcgctgcgctcgccg
atcttcggcgcgagcgacgcggacctggtcgcgctggcgcaggcggcgcgcgcgggaggc
cgcggctggatgcaggcgctggccggattgcccgaggaggcgctgagcccggcgctgcag
cgtgcgcgccggctgctggccgcctggcgcgaggacgcgctgcgcctgccgccgcacgac
ctgctcgaccgcatcgtggcccagggcgagctgcgcgcgcgttatgccgcggccgtcccg
gccgagctgcgcagcgcggcgctcgcgcacctggacgccttgctggcgctggcgctggag
ctggacggcggccgctacgcgacgccgtacaagctggtgcgcgcgctgcgccgccggccg
ctgagcgtgaagtcgcgcaccgacgcgcaggcggtgcagctgctgaccgtccacggcgcc
aaggggctggaggcgccggtggtcttcatcatggacaccgacagcgccagcgaccgcccc
gagcggaccaccgcgctgatcgactggccggccgaggcggcctgcccggactgcttcgcc
ttcatcgcgtccgaggcgcgcgtgccgccgagcctggctgcggtgctggagcacgagcgc
caggcgcgtgcccgcgaggagctcaacgggctgtacgtggcgatgacccgcgcgcgcgag
cagctggtcttcagcgccaccgcgccgcaccggcgcccgtccgagcgcacctggtgggag
cgcatcggtgaggtgccgggcgtggtgcgctgggagggcgagccggagccggcaccggcg
gctgcagccgggccgggcgctgcggcgccgctcgtgctgtgcgagctgccggcgctgccg
cgtgcggccgaggccgtggcgccgtccgtgccgcaggcggccacgaccgcccgcgtgggc
gaggccgtgcaccgtgcgctggagtggctgacggcgcggcccgacccgctcgacggctgg
cgcgagaccgtggccgccgcggcgcgggcattcgggctggacgactcgcagcgcgcccac
gccgagcacgtggtcgcccgggtgctgacaagcgatgcgttccggccgttcctggccggc
gagcggctgcgctgggccggcaacgaggtgccgctcgcccatggcgggcaggtgctgcgg
gtggaccggctggtgcagctggccgacggcgagggctgccagtggtgggtgctggactac
aagctcgaccacgccccgcacgagctggcagcctaccgcgagcagctggcgcgctaccgc
gaggcggtgcgcgaggcgctggccggacgcgagccgcatgcgcaggtgcaggtgcgcgcc
gccttcgtgaccgggcgcggggaggtgatcgagctgccggcctga
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