Caldimonas thermodepolymerans: IS481_10335
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Entry
IS481_10335 CDS
T06911
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
sthm
Caldimonas thermodepolymerans
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sthm03032
]
IS481_10335
03036 Chromosome and associated proteins [BR:
sthm03036
]
IS481_10335
03400 DNA repair and recombination proteins [BR:
sthm03400
]
IS481_10335
DNA replication proteins [BR:
sthm03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
IS481_10335
Chromosome and associated proteins [BR:
sthm03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
IS481_10335
DNA repair and recombination proteins [BR:
sthm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
IS481_10335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
Motif
Other DBs
NCBI-ProteinID:
QPC30203
LinkDB
All DBs
Position
complement(2213229..2213612)
Genome browser
AA seq
127 aa
AA seq
DB search
MNRIELIEKIASSHDLSKAAAGRILDTLIDTIVGAVKKGDTVQLVGFGTFKQVSRAARTG
FNPREGKAIKIPAAKVPKFVPGSAFKAAVDPKAAARKAAAGAKTAAAKKPAAKKAAPAKK
SAAKKAR
NT seq
384 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgcattgaactgattgaaaaaatcgcctcttcccatgacctgagcaaggctgct
gccggtcgcatcctggacacgctgatcgacaccatcgtcggcgccgtcaagaagggtgac
accgtgcagctggtcggcttcggcacgttcaagcaggtcagccgtgccgcccgcaccggc
ttcaacccgcgcgaaggcaaggcgatcaagattcctgccgccaaggtgccgaagttcgtg
ccgggcagcgcgttcaaggcggctgtcgatccgaaggccgctgcgcgcaaggccgctgcc
ggcgccaagaccgctgctgccaagaagcccgctgcgaagaaggccgctcctgccaagaag
tcggccgccaagaaggcccgctga
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integrated database retrieval system
