Caldimonas thermodepolymerans: IS481_11355
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Entry
IS481_11355 CDS
T06911
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sthm
Caldimonas thermodepolymerans
Pathway
sthm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IS481_11355 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sthm03019
]
IS481_11355 (pnp)
03016 Transfer RNA biogenesis [BR:
sthm03016
]
IS481_11355 (pnp)
Enzymes [BR:
sthm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IS481_11355 (pnp)
Messenger RNA biogenesis [BR:
sthm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IS481_11355 (pnp)
Transfer RNA biogenesis [BR:
sthm03016
]
Prokaryotic type
tRNA degradation factors
IS481_11355 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
DUF5813
OB_RRP5_4th
DUF4164
XPB_DRD
iHKD
KH-I_KHDC4-BBP
KH_KhpA-B
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
QPC30376
LinkDB
All DBs
Position
complement(2423693..2425849)
Genome browser
AA seq
718 aa
AA seq
DB search
MSMFNKVTKTFQWGPHKVIMETGEIARQATGAVLVNIEDTVVLATVVAAKNPKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREGRPSEHETLTSRLIDRPIRPLFPDGFFNEVQVVVHVL
SLNPEVEADIAAMIASSAALAVSGIPFNGPIGAARVGYINGEYVLNPGKSQLAQSRLDLV
VAGTEAAVLMVESEADQLPEDVMLGAVVFGHEQGKVAIAAINELVREAGKPEWDWQPPPK
DEAFIAKVNALAEDKLRAAYQIRSKQSRTQALRQAYAEVKEALAAEGVEFDEVKVDGLLF
DIEARIVRSQILAGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGT
ERDAQIIDALSGEFTDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPPK
DEFAYAIRVVSEITESNGSSSMASVCGGCLALMDAGVPLKAHVAGIAMGLIKEGNRFAVL
TDILGDEDHLGDMDFKVAGTTAGVTALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGGAKAEISQFAPRLYTMKINPEKIRDVIGKGGATIRALTEETGTTIDIAEDGTITIA
STDADRAELARKRIEEITAEVEVGKVYEGPVTKILEFGALVNLLPGKDGLLHISQIAHER
VAKVTDYLQEGQVVRVKVLETDEKGRVKLSMKALQDRNGNGGAASADQQAQQQQQQQQ
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgttcaacaaagtcaccaagaccttccagtggggcccccacaaggtcatcatg
gaaaccggcgagatcgcccgccaggccaccggcgcggtgctggtcaacatcgaggacacc
gtcgtgctggccacggtggtggccgccaagaacccgaagccgggccaggacttcttcccg
ctgacggtcgactacatcgagaagacctacgcggccggcaagatcccgggcagcttcttc
aagcgtgaaggccgcccgagcgagcacgagacgctgacctcgcgcctgatcgaccgcccg
atccgcccgctgttcccggacggcttcttcaacgaggtgcaggtggtcgtccacgtgctg
tcgctgaaccccgaggtcgaagcggacatcgccgcgatgatcgcctcgagcgcggcgctg
gccgtctcgggcatcccgttcaacggcccgatcggtgcggcgcgcgtcggctacatcaac
ggcgagtacgtgctgaacccgggcaagagccagctggcgcagtcgcgcctggacctggtg
gttgccggcaccgaagcggccgtgctgatggtcgagtccgaggccgaccagctgcccgag
gacgtgatgctgggcgccgtggtgttcggccacgagcagggcaaggtcgcgatcgccgcc
atcaacgagctggtgcgcgaggccggcaagccggaatgggactggcagcccccgcccaag
gacgaggccttcatcgccaaggtcaacgcgctggccgaggacaagctgcgcgcggcctac
cagatccgctccaagcagtcgcgcacccaggcgctgcgccaggcctacgcggaggtcaag
gaagccctggccgccgagggcgtggagttcgacgaggtcaaggtcgacggcctgctgttc
gacatcgaggcgcgcatcgtgcgcagccagatcctggcgggcgagccgcgcatcgacggc
cgcgacacccgcaccgtgcgcccgatcgagatccgcaccggcgtgctgccgcgcacccac
ggttcggcgctgttcacccgcggcgagacccaggccctggtcgtcgcgacgctgggcacc
gagcgtgacgcgcagatcatcgacgcgctgtcgggcgagttcaccgaccgcttcatgctg
cactacaacatgccgccgttcgccaccggcgaaaccggccgcgtcggcagcccgaagcgc
cgcgagatcggccacggtcgcttggccaagcgcgcgctgatcccggtgctgccgcccaag
gacgagttcgcctacgcgatccgcgtggtgtcggagatcaccgaatccaacggttcgtcg
tcgatggcctccgtctgcggcggctgcctggcgctgatggacgccggcgtgccgctgaag
gcgcacgtggccggcatcgcgatgggcctgatcaaggaaggcaaccgcttcgcggtgctg
accgacatcctgggtgacgaggaccacctgggcgacatggacttcaaggtggccggcacc
accgccggcgtgaccgccctgcagatggacatcaagatccagggcatcaccaaggagatc
atgcaggtcgcgctggcacaggccaaggaagcgcgcatgcacatcctgggcaagatgcag
gaagcgatgggcggcgccaaggccgagatctcgcagttcgcgccgcgcctgtacacgatg
aagatcaatccggagaagatccgcgacgtgatcggcaagggtggcgcgacgatccgcgcg
ctgaccgaggaaaccggcacgacgatcgacatcgccgaagacggcaccatcaccatcgcc
tccaccgatgccgaccgggccgagctggccaggaagcgcatcgaggagatcaccgccgag
gtcgaggtgggcaaggtctacgaaggcccggtcaccaagatcctggagttcggtgcgctg
gtgaacctgctgcccggcaaggacggcctgctgcacatcagccagatcgcccacgagcgc
gtggccaaggtcaccgactacctgcaggaagggcaggtcgtgcgcgtcaaggtgctcgag
accgacgagaagggccgcgtcaagctgtcgatgaaggcgctgcaggaccgcaacggcaac
ggcggggcggcgtcggccgaccagcaggcgcagcagcaacagcagcaacagcagtga
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