Caldimonas thermodepolymerans: IS481_12420
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Entry
IS481_12420 CDS
T06911
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sthm
Caldimonas thermodepolymerans
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sthm03016
]
IS481_12420 (thpR)
Enzymes [BR:
sthm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
IS481_12420 (thpR)
Transfer RNA biogenesis [BR:
sthm03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
IS481_12420 (thpR)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Herpes_ORF11
Motif
Other DBs
NCBI-ProteinID:
QPC30568
LinkDB
All DBs
Position
complement(2638827..2639363)
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AA seq
178 aa
AA seq
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MSARPAPPFARLFFALWPDAATRAEWVACQQDWAWPEGAHLTPQDQLHLTLHFLGRVPRD
RLPALQQQAQVPFKPFELCLDRAGTWPSGIAWLQPSVLPEPLLALHRELGTLLQGQGFEL
EDRRYRPHVTLARNARAARAPAAVAIPWRVDGYVLVESHAGTGGGYEVLCRYGETIGA
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcacgacccgcgccgccctttgcccgcttgttcttcgcgctgtggccggatgcg
gcgacccgcgccgaatgggtcgcctgccagcaggactgggcctggcccgagggcgcccac
ctcacgccgcaggaccagctgcacctgaccctgcacttccttggccgcgtgccgcgcgac
cggttgcccgcattgcagcagcaggcgcaggtcccgttcaagccgttcgagctgtgcctg
gaccgggcaggcacttggccgtcgggcatcgcctggctgcagccatcggtgctgcccgag
ccgctgctggcgctgcatcgtgaactgggcacgctgctgcagggacaaggcttcgagctc
gaggaccggcgctatcgcccgcatgtcacgctcgcgcgcaacgcgcgggccgccagggcg
ccggcagccgtggccattccctggcgcgtcgacggctacgtgctggtcgaatcgcatgcg
ggcaccggcggcggctacgaggtgctgtgccgctacggcgagaccatcggcgcctga
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