Caldimonas thermodepolymerans: IS481_14485
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Entry
IS481_14485 CDS
T06911
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sthm
Caldimonas thermodepolymerans
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sthm03016
]
IS481_14485
Enzymes [BR:
sthm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IS481_14485
Transfer RNA biogenesis [BR:
sthm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IS481_14485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
VWA_3_C
Myosin_N
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QPC30934
LinkDB
All DBs
Position
3077221..3079278
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AA seq
685 aa
AA seq
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MFALFEDAGKFFAGRVMSEAEASIQVELDSGKRVKVKSANVLLKFEQPQPAELLAQAQVQ
AEEIDLDLAWEFAPAEEFGFADIARDYFNEKASPVQQAAALLRLFGAPHYFRRVGKGRFR
KAPEEAVKAALLGIERKKQQQAQIGAWAAELVEGRCPQPIRDQLYRILFKPDKNGLEYKA
VVEASKRAHVAPLELLQRAGAIDSPYQFHWRRFLFEHFPKGYGFPPLELPQVSEELPVAP
VQAFSVDDSSTTEIDDALSVQGLGTGTVVLGIHIAAPGLAITPGSPMDQVARSRYSTVYM
PGYKITMLPDEMVQAYTLVEGRACPAVSLYVTLDEATLEIRGSETRVERVPIAANLRHDQ
LDDVITEASLTGQAPADYPFHAELAFVFRFARHFKAQREVVRGKPENFTRPDYTFRLEGN
GDQEPTGQETVHITTRKRGAPLDLMVAEAMILANSLWGGWLAELGVPGIYRSQASLLPGV
KVRMSTKPLPHAGMGVKQYTWATSPLRRYVDLVNQWQIIACARHGRTAALAAPFKPKDAE
LFSIISGFDAAYSAYNEFQSGIERYWTLRYLEQNGITELVAAVLKDGLVRAETLPLVLRA
VGAENLARGVRVRVRVTSVDELTLDVHASVIERLDEAPAADMIAEDEAELEEEAGAAAGP
LSLAIDVNDEAGPDEGDNTASAPAA
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccctgttcgaagatgccgggaagtttttcgccggccgcgtgatgtccgaagcg
gaggcctcgatccaggtcgagctcgactccggcaagcgcgtcaaggtcaagtccgccaac
gtgctgctgaagttcgagcagccgcaacccgccgaactgctcgcccaggcccaggtgcag
gccgaggagatcgacctcgacctcgcctgggaattcgccccggccgaggagttcggcttc
gccgacatcgcgcgcgactatttcaacgagaaggcctcgccggtgcagcaggccgccgca
ctgctgcgcctgttcggcgcgccgcactacttccgccgcgtcggcaagggccgcttcagg
aaggcgcccgaagaagcggtcaaggccgccctgctcggcatcgagcgcaagaagcagcag
caggcccagatcggcgcctgggcggccgagctggtcgaaggccgttgcccgcagccgatc
cgtgaccagctctaccgcatcctgttcaagccggacaagaacggcctggaatacaaggcc
gtcgtcgaggccagcaagcgcgcgcacgtcgcgccgctggagctgctgcagcgcgccggc
gcgatcgacagcccgtaccagttccactggcggcgcttcctgttcgagcacttccccaag
ggctacggcttccccccgctggaactgccccaggtgagcgaggagctgccggtggcgccg
gtgcaggcgttcagcgtcgacgattcctccaccaccgagatcgacgatgcgctgtccgtg
cagggcctgggcaccggcaccgtggtgctgggcatccacatcgccgcgccgggcctggcg
atcacgcccggctcgccgatggaccaggtggcgcgcagccgctactcgacggtctacatg
ccgggctacaagatcaccatgctgcccgacgagatggtgcaggcctacacgctggtcgag
ggccgcgcctgcccggcggtgtcgctgtacgtgacgctggacgaggccacgctggagatc
cggggcagcgagacgcgcgtcgagcgggtgccgatcgcggccaacctgcgccacgaccag
ctcgacgacgtgatcaccgaggcctcgctgaccggccaggcaccggccgactacccgttc
cacgccgaactggccttcgtgttccgcttcgccaggcacttcaaggcgcagcgcgaggtg
gtgcgcggcaagccggagaacttcacccgccccgactacaccttccggttggaaggcaac
ggcgaccaggagcccaccggccaggagaccgtgcacatcaccacgcgcaagcgcggcgcg
ccgctggacctgatggtggccgaggcgatgatcctcgccaacagcctgtggggtggctgg
ctcgccgagctgggcgtgcccggcatctaccgcagccaggcgagcctgctgcccggcgtg
aaggtgcgcatgagcaccaagccgctgccgcacgcgggcatgggcgtgaagcagtacacc
tgggccacctcgccgctgcgccgctacgtggacctggtcaaccagtggcagatcatcgcc
tgcgcccgccacggccgcaccgccgcactggccgcgccgttcaagcccaaggatgccgaa
ctgttctcgatcatctccgggttcgacgcggcctactcggcctacaacgagttccagtcg
ggcatcgagcgctactggacgctgcgctacctggaacagaacggcatcaccgaactggtc
gccgcggtgctgaaggacggcctggtgcgcgccgagacgctgccgctcgtgctgcgcgcg
gtcggcgcggagaacctggcgcgcggcgtgcgggtgcgcgtgcgcgtcacctcggtcgac
gagctgacgctggacgtgcatgccagcgtgatcgagcggctggacgaggcgcctgcggcc
gacatgatcgccgaggacgaagccgagctcgaggaggaggccggcgccgcggccggcccg
ctgtcgctggccatcgacgtgaacgacgaggcggggccggacgaaggcgacaatacagcc
tcagcccctgccgcctga
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